KEGG   PATHWAY: taa00020
Entry
taa00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Nitrosocosmicus oleophilus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
taa00020  Citrate cycle (TCA cycle)
taa00020

Module
taa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:taa00020]
taa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:taa00020]
taa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:taa00020]
taa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:taa00020]
Other DBs
GO: 0006099
Organism
Candidatus Nitrosocosmicus oleophilus [GN:taa]
Gene
NMY3_02546  citZ; Citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
NMY3_03228  citB; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
NMY3_01427  hicd_1; Homoisocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
NMY3_03277  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
NMY3_03278  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
NMY3_03334  sucD_2; Succinyl-CoA ligase (ADP-forming) subunit alpha [KO:K01902] [EC:6.2.1.5]
NMY3_03335  sucC; Succinyl-CoA ligase (ADP-forming) subunit beta [KO:K01903] [EC:6.2.1.5]
NMY3_00189  sdhA_1; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NMY3_00944  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NMY3_00947  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NMY3_00945  Succinate dehydrogenase/Fumarate reductase transmembrane subunit [KO:K00241]
NMY3_00946  Succinate dehydrogenase/Fumarate reductase transmembrane subunit [KO:K00242]
NMY3_01319  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
NMY3_01945  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NMY3_03308  pckA; Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
taa00010  Glycolysis / Gluconeogenesis
taa00061  Fatty acid biosynthesis
taa00071  Fatty acid degradation
taa00190  Oxidative phosphorylation
taa00220  Arginine biosynthesis
taa00250  Alanine, aspartate and glutamate metabolism
taa00280  Valine, leucine and isoleucine degradation
taa00350  Tyrosine metabolism
taa00470  D-Amino acid metabolism
taa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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