KEGG   PATHWAY: tasa00020
Entry
tasa00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Trichosporon asahii var. asahii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tasa00020  Citrate cycle (TCA cycle)
tasa00020

Module
tasa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tasa00020]
tasa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tasa00020]
tasa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tasa00020]
tasa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tasa00020]
Other DBs
GO: 0006099
Organism
Trichosporon asahii var. asahii [GN:tasa]
Gene
A1Q1_05722  citrate synthase [KO:K01647] [EC:2.3.3.1]
A1Q1_06527  ATP-citrate synthase subunit 1 (ATP-citrate (pro-S-)-lyase 1) [KO:K01648] [EC:2.3.3.8]
A1Q1_02221  aconitase [KO:K01681] [EC:4.2.1.3]
A1Q1_07008  isocitrate dehydrogenase (NADP+) [KO:K00031] [EC:1.1.1.42]
A1Q1_00368  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
A1Q1_02074  isocitrate dehydrogenase (NAD+) [KO:K00030] [EC:1.1.1.41]
A1Q1_03926  oxoglutarate dehydrogenase (succinyl-transferring) [KO:K00164] [EC:1.2.4.2]
A1Q1_05138  2-oxoglutarate metabolism-related protein [KO:K00658] [EC:2.3.1.61]
A1Q1_08097  Lpd1 [KO:K00382] [EC:1.8.1.4]
A1Q1_00225  succinyl-coa ligase alpha-chain, precursor [KO:K01899] [EC:6.2.1.4 6.2.1.5]
A1Q1_01718  hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
A1Q1_01065  succinate-CoA ligase (ADP-forming) [KO:K01900] [EC:6.2.1.4 6.2.1.5]
A1Q1_08198  succinate dehydrogenase flavoprotein subunit precursor [KO:K00234] [EC:1.3.5.1]
A1Q1_07510  succinate dehydrogenase iron-sulfur subunit [KO:K00235] [EC:1.3.5.1]
A1Q1_00748  hypothetical protein [KO:K00236]
A1Q1_05032  inner membrane protein [KO:K00237]
A1Q1_05521  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
A1Q1_00830  L-malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
A1Q1_02276  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
A1Q1_05197  hypothetical protein [KO:K01958] [EC:6.4.1.1]
A1Q1_02831  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
A1Q1_01291  pyruvate dehydrogenase e1 component alpha subunit, precursor [KO:K00161] [EC:1.2.4.1]
A1Q1_02648  pyruvate dehydrogenase e1 component beta subunit, precursor [KO:K00162] [EC:1.2.4.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tasa00010  Glycolysis / Gluconeogenesis
tasa00053  Ascorbate and aldarate metabolism
tasa00061  Fatty acid biosynthesis
tasa00062  Fatty acid elongation
tasa00071  Fatty acid degradation
tasa00190  Oxidative phosphorylation
tasa00220  Arginine biosynthesis
tasa00250  Alanine, aspartate and glutamate metabolism
tasa00280  Valine, leucine and isoleucine degradation
tasa00350  Tyrosine metabolism
tasa00470  D-Amino acid metabolism
tasa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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