KEGG   PATHWAY: tcc00630
Entry
tcc00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Theobroma cacao (cacao)
Class
Metabolism; Carbohydrate metabolism
Pathway map
tcc00630  Glyoxylate and dicarboxylate metabolism
tcc00630

Module
tcc_M00012  Glyoxylate cycle [PATH:tcc00630]
tcc_M00532  Photorespiration [PATH:tcc00630]
tcc_M00621  Glycine cleavage system [PATH:tcc00630]
Other DBs
GO: 0046487 0043648
Organism
Theobroma cacao (cacao) [GN:tcc]
Gene
18610079  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
18601189  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal [KO:K01895] [EC:6.2.1.1]
18603611  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
18605063  malate synthase, glyoxysomal [KO:K01638] [EC:2.3.3.9]
18614398  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
18603218  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
18607305  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
18611372  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
18604702  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
18594136  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
18596725  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
18614684  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
18612123  citrate synthase 3, peroxisomal [KO:K01647] [EC:2.3.3.1]
18610098  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
18610706  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
18593495  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
18593492  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
18612494  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
18597350  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
18594535  peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [KO:K11517] [EC:1.1.3.15]
18596266  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [KO:K11517] [EC:1.1.3.15]
18596267  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [KO:K11517] [EC:1.1.3.15]
18596265  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [KO:K11517] [EC:1.1.3.15]
18596481  peroxisomal (S)-2-hydroxy-acid oxidase [KO:K11517] [EC:1.1.3.15]
18610656  catalase isozyme 2 [KO:K03781] [EC:1.11.1.6]
18591705  catalase isozyme 1 [KO:K03781] [EC:1.11.1.6]
18606414  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
18614257  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
18595944  glyoxylate/hydroxypyruvate reductase A HPR2 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
18614256  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
18614255  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
18612560  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
18596134  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
18607536  glycerate dehydrogenase [KO:K15893] [EC:1.1.1.29]
18598468  phosphoglycolate phosphatase 1B, chloroplastic [KO:K19269] [EC:3.1.3.18 3.1.3.48]
18597356  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
9978124  rbcL; ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
18589292  ribulose bisphosphate carboxylase small chain clone 512 [KO:K01602] [EC:4.1.1.39]
18602056  ribulose bisphosphate carboxylase small chain, chloroplastic [KO:K01602] [EC:4.1.1.39]
18589941  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
18609536  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
18598741  ferredoxin-dependent glutamate synthase, chloroplastic [KO:K00284] [EC:1.4.7.1]
18608511  glutamine synthetase cytosolic isozyme 1 [KO:K01915] [EC:6.3.1.2]
18601193  glutamine synthetase cytosolic isozyme 2 [KO:K01915] [EC:6.3.1.2]
18604409  glutamine synthetase nodule isozyme [KO:K01915] [EC:6.3.1.2]
18602866  glutamine synthetase leaf isozyme, chloroplastic [KO:K01915] [EC:6.3.1.2]
18588037  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
18611409  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
18607820  serine hydroxymethyltransferase 6 [KO:K00600] [EC:2.1.2.1]
18602644  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
18591852  serine hydroxymethyltransferase 2, mitochondrial [KO:K00600] [EC:2.1.2.1]
18592240  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
18588058  glycine dehydrogenase (decarboxylating), mitochondrial [KO:K00281] [EC:1.4.4.2]
18597179  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
18603617  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
18603721  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
18606077  glycine cleavage system H protein, mitochondrial [KO:K02437]
18607058  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
18595852  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
18600748  formate dehydrogenase, mitochondrial [KO:K00122] [EC:1.17.1.9]
18606239  formyltetrahydrofolate deformylase 1, mitochondrial [KO:K01433] [EC:3.5.1.10]
18611267  formamidase [KO:K01455] [EC:3.5.1.49]
18605571  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
18606505  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
tcc00010  Glycolysis / Gluconeogenesis
tcc00020  Citrate cycle (TCA cycle)
tcc00030  Pentose phosphate pathway
tcc00053  Ascorbate and aldarate metabolism
tcc00071  Fatty acid degradation
tcc00230  Purine metabolism
tcc00250  Alanine, aspartate and glutamate metabolism
tcc00260  Glycine, serine and threonine metabolism
tcc00620  Pyruvate metabolism
tcc00710  Carbon fixation by Calvin cycle
tcc00750  Vitamin B6 metabolism
tcc00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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