KEGG   PATHWAY: tci00030
Entry
tci00030                    Pathway                                
Name
Pentose phosphate pathway - Tatumella citrea
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tci00030  Pentose phosphate pathway
tci00030

Module
tci_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:tci00030]
tci_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:tci00030]
tci_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:tci00030]
tci_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:tci00030]
Other DBs
GO: 0006098
Organism
Tatumella citrea [GN:tci]
Gene
A7K98_18175  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
A7K98_10725  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
A7K98_20730  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
A7K98_06380  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
A7K98_14715  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
A7K98_02840  lactonase [KO:K07404] [EC:3.1.1.31]
A7K98_09885  lactonase [KO:K07404] [EC:3.1.1.31]
A7K98_13135  phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) [KO:K00033] [EC:1.1.1.44 1.1.1.343]
A7K98_00395  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
A7K98_04030  transketolase [KO:K00615] [EC:2.2.1.1]
A7K98_14475  transketolase [KO:K00615] [EC:2.2.1.1]
A7K98_16455  transaldolase [KO:K00616] [EC:2.2.1.2]
A7K98_14470  transaldolase [KO:K00616] [EC:2.2.1.2]
A7K98_04080  ribose 5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
A7K98_14030  ribose-5-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
A7K98_03465  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
A7K98_20230  ribokinase [KO:K00852] [EC:2.7.1.15]
A7K98_02285  ribokinase [KO:K00852] [EC:2.7.1.15]
A7K98_03475  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
A7K98_06155  phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
A7K98_08340  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
A7K98_11430  choline dehydrogenase [KO:K19813] [EC:1.1.5.9]
A7K98_02860  choline dehydrogenase [KO:K19813] [EC:1.1.5.9]
A7K98_09125  choline dehydrogenase [KO:K19813] [EC:1.1.5.9]
A7K98_20775  choline dehydrogenase [KO:K19813] [EC:1.1.5.9]
A7K98_09340  choline dehydrogenase [KO:K19813] [EC:1.1.5.9]
A7K98_07205  choline dehydrogenase [KO:K19813] [EC:1.1.5.9]
A7K98_19555  glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
A7K98_17865  glucose dehydrogenase [KO:K00117] [EC:1.1.5.2]
A7K98_02605  gluconolactonase [KO:K01053] [EC:3.1.1.17]
A7K98_09500  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
A7K98_01560  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
A7K98_06560  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
A7K98_12290  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
A7K98_12615  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
A7K98_08210  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
A7K98_08780  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
A7K98_20425  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
A7K98_11485  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
A7K98_17765  GMC family oxidoreductase [KO:K06151] [EC:1.1.99.3]
A7K98_09505  gluconate 2-dehydrogenase [KO:K06152] [EC:1.1.99.3]
A7K98_01555  gluconate 2-dehydrogenase [KO:K06152] [EC:1.1.99.3]
A7K98_06565  gluconate 2-dehydrogenase [KO:K06152] [EC:1.1.99.3]
A7K98_12285  hypothetical protein [KO:K06152] [EC:1.1.99.3]
A7K98_12620  gluconate 2-dehydrogenase [KO:K06152] [EC:1.1.99.3]
A7K98_08215  gluconate 2-dehydrogenase [KO:K06152] [EC:1.1.99.3]
A7K98_08775  gluconate 2-dehydrogenase [KO:K06152] [EC:1.1.99.3]
A7K98_20420  gluconate 2-dehydrogenase [KO:K06152] [EC:1.1.99.3]
A7K98_11480  hypothetical protein [KO:K06152] [EC:1.1.99.3]
A7K98_17770  gluconate 2-dehydrogenase [KO:K06152] [EC:1.1.99.3]
A7K98_00080  bifunctional glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
A7K98_00235  gntK; gluconate kinase [KO:K00851] [EC:2.7.1.12]
A7K98_11260  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
A7K98_04045  class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
A7K98_17035  fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
A7K98_19885  fructose-1,6-bisphosphatase, class II [KO:K02446] [EC:3.1.3.11]
A7K98_19920  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
tci00010  Glycolysis / Gluconeogenesis
tci00040  Pentose and glucuronate interconversions
tci00052  Galactose metabolism
tci00230  Purine metabolism
tci00240  Pyrimidine metabolism
tci00340  Histidine metabolism
tci00630  Glyoxylate and dicarboxylate metabolism
tci00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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