KEGG   PATHWAY: tng03030
Entry
tng03030                    Pathway                                
Name
DNA replication - Tetraodon nigroviridis (spotted green pufferfish)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
tng03030  DNA replication
tng03030

Organism
Tetraodon nigroviridis (spotted green pufferfish) [GN:tng]
Gene
GSTEN00020247G001  unnamed protein product [KO:K03469] [EC:3.1.26.4]
GSTEN00029998G001  unnamed protein product [KO:K07466]
GSTEN00028590G001  unnamed protein product [KO:K04802]
GSTEN00025786G001  unnamed protein product [KO:K10742] [EC:5.6.2.3 3.1.-.-]
GSTEN00004156G001  unnamed protein product [KO:K04799] [EC:3.1.-.-]
GSTEN00015518G001  unnamed protein product [KO:K02320] [EC:2.7.7.7]
GSTEN00031153G001  unnamed protein product [KO:K02321]
GSTEN00030696G001  unnamed protein product [KO:K02685]
GSTEN00021892G001  unnamed protein product [KO:K02327] [EC:2.7.7.7]
GSTEN00004530G001  unnamed protein product [KO:K02328]
GSTEN00015201G001  unnamed protein product [KO:K03504]
GSTEN00029542G001  unnamed protein product [KO:K02324] [EC:2.7.7.7]
GSTEN00032040G001  unnamed protein product [KO:K02325] [EC:2.7.7.7]
GSTEN00005214G001  unnamed protein product [KO:K02326] [EC:2.7.7.7]
GSTEN00028806G001  unnamed protein product [KO:K03506] [EC:2.7.7.7]
GSTEN00032473G001  unnamed protein product [KO:K02540] [EC:5.6.2.3]
GSTEN00035496G001  unnamed protein product [KO:K02541] [EC:5.6.2.3]
GSTEN00016183G001  unnamed protein product [KO:K02212] [EC:5.6.2.3]
GSTEN00015093G001  unnamed protein product [KO:K02542] [EC:5.6.2.3]
GSTEN00029242G001  unnamed protein product [KO:K02210] [EC:5.6.2.3]
GSTEN00005543G001  unnamed protein product [KO:K10739]
GSTEN00010189G001  unnamed protein product [KO:K10754]
GSTEN00001491G001  unnamed protein product [KO:K10755]
GSTEN00027867G001  unnamed protein product [KO:K10755]
GSTEN00019812G001  unnamed protein product [KO:K10755]
GSTEN00018858G001  unnamed protein product [KO:K10756]
GSTEN00029055G001  unnamed protein product [KO:K10756]
GSTEN00007880G001  unnamed protein product [KO:K10743] [EC:3.1.26.4]
GSTEN00025920G001  unnamed protein product [KO:K10744]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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