KEGG   PATHWAY: tre00020
Entry
tre00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Trichoderma reesei QM6a
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tre00020  Citrate cycle (TCA cycle)
tre00020

Module
tre_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tre00020]
tre_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tre00020]
tre_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tre00020]
tre_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tre00020]
tre_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tre00020]
Other DBs
GO: 0006099
Organism
Trichoderma reesei QM6a [GN:tre]
Gene
TRIREDRAFT_80621  2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
TRIREDRAFT_122296  cit1; citrate-synthase [KO:K01647] [EC:2.3.3.1]
TRIREDRAFT_121826  acl2; beta subunit of ATP citrate lyase [KO:K01648] [EC:2.3.3.8]
TRIREDRAFT_121824  acl1; alpha subunit of ATP citrate lyase [KO:K01648] [EC:2.3.3.8]
TRIREDRAFT_77336  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
TRIREDRAFT_52055  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
TRIREDRAFT_74983  idh2; isocitrate dehydrogenase, subunit 2, NAD-dependent, mitochondrial [KO:K00030] [EC:1.1.1.41]
TRIREDRAFT_120378  isocitrate dehydrogenase, subunit 1, NAD dependent, mitochondrial [KO:K00030] [EC:1.1.1.41]
TRIREDRAFT_50531  2-oxoglutarate dehydrogenase-like protein [KO:K00164] [EC:1.2.4.2]
TRIREDRAFT_3653  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
TRIREDRAFT_77373  dihydrolipoyl dehydrogenase-like protein [KO:K00382] [EC:1.8.1.4]
TRIREDRAFT_22910  alpha subunit of GDP-forming succinate-CoA ligase [KO:K01899] [EC:6.2.1.4 6.2.1.5]
TRIREDRAFT_2223  alpha subunit of GDP-forming succinate-CoA ligase [KO:K01899] [EC:6.2.1.4 6.2.1.5]
TRIREDRAFT_103451  beta subunit of GDP-forming succinate-CoA ligase [KO:K01900] [EC:6.2.1.4 6.2.1.5]
TRIREDRAFT_80881  beta subunit of GDP-forming succinate-CoA ligase [KO:K01900] [EC:6.2.1.4 6.2.1.5]
TRIREDRAFT_121019  succinate dehydrogenase [KO:K00234] [EC:1.3.5.1]
TRIREDRAFT_123198  succinate dehydrogenase [KO:K00235] [EC:1.3.5.1]
TRIREDRAFT_60089  hypothetical protein [KO:K00236]
TRIREDRAFT_22707  hypothetical protein [KO:K00237]
TRIREDRAFT_2745  fumarate hydratase-like protein [KO:K01679] [EC:4.2.1.2]
TRIREDRAFT_4009  hypothetical protein [KO:K00026] [EC:1.1.1.37]
TRIREDRAFT_123729  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
TRIREDRAFT_21957  pyc1; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
TRIREDRAFT_124115  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
TRIREDRAFT_122987  E1 component alpha subunit of pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
TRIREDRAFT_76744  E1 component beta subunit of acetyl-transferring pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
TRIREDRAFT_44038  dihydrolipoyllysine-residue acetyltransferase-like protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tre00010  Glycolysis / Gluconeogenesis
tre00053  Ascorbate and aldarate metabolism
tre00061  Fatty acid biosynthesis
tre00062  Fatty acid elongation
tre00071  Fatty acid degradation
tre00190  Oxidative phosphorylation
tre00220  Arginine biosynthesis
tre00250  Alanine, aspartate and glutamate metabolism
tre00280  Valine, leucine and isoleucine degradation
tre00350  Tyrosine metabolism
tre00470  D-Amino acid metabolism
tre00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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