KEGG   PATHWAY: uli00260
Entry
uli00260                    Pathway                                
Name
Glycine, serine and threonine metabolism - Urbifossiella limnaea
Description
Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].
Class
Metabolism; Amino acid metabolism
Pathway map
uli00260  Glycine, serine and threonine metabolism
uli00260

Module
uli_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:uli00260]
uli_M00621  Glycine cleavage system [PATH:uli00260]
Other DBs
GO: 0006544 0006563 0070178 0006566
Organism
Urbifossiella limnaea [GN:uli]
Gene
ETAA1_00640  asd2; Aspartate-semialdehyde dehydrogenase 2 [KO:K00133] [EC:1.2.1.11]
ETAA1_01380  pgsA1; CDP-diacylglycerol--inositol 3-phosphatidyltransferase [KO:K17103] [EC:2.7.8.8]
ETAA1_05500  thrC_1; Threonine synthase [KO:K01733] [EC:4.2.3.1]
ETAA1_06040  sdaA; L-serine dehydratase 1 [KO:K01752] [EC:4.3.1.17]
ETAA1_06260  gcvPB; putative glycine dehydrogenase (decarboxylating) subunit 2 [KO:K00283] [EC:1.4.4.2]
ETAA1_06280  gcvPA; putative glycine dehydrogenase (decarboxylating) subunit 1 [KO:K00282] [EC:1.4.4.2]
ETAA1_06290  gcvH_1; Glycine cleavage system H protein [KO:K02437]
ETAA1_06300  gcvT_1; Glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
ETAA1_10080  soxA; Monomeric sarcosine oxidase [KO:K00301] [EC:1.5.3.1]
ETAA1_10220  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ETAA1_11830  serA_1; D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
ETAA1_15140  thrC_2; Threonine synthase [KO:K01733] [EC:4.2.3.1]
ETAA1_22410  [KO:K15784] [EC:3.5.1.125]
ETAA1_24450  glyA; Serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
ETAA1_25920  ttuD; Putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
ETAA1_33390  cysK; Cysteine synthase [KO:K01697] [EC:4.2.1.22]
ETAA1_34670  hom; Homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
ETAA1_35480  pucG; Purine catabolism protein PucG [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
ETAA1_35700  gpgP; Glucosyl-3-phosphoglycerate phosphatase [KO:K15634] [EC:5.4.2.11]
ETAA1_45770  lysC; Aspartokinase [KO:K00928] [EC:2.7.2.4]
ETAA1_45780  kbl; 2-amino-3-ketobutyrate coenzyme A ligase [KO:K00639] [EC:2.3.1.29]
ETAA1_47060  cbs; Putative cystathionine beta-synthase [KO:K01697] [EC:4.2.1.22]
ETAA1_47070  metC; Cystathionine beta-lyase [KO:K01758] [EC:4.4.1.1]
ETAA1_49660  thrC_3; Threonine synthase [KO:K01733] [EC:4.2.3.1]
ETAA1_49820  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ETAA1_51210  [KO:K15635] [EC:5.4.2.12]
ETAA1_51760  trpA; Tryptophan synthase alpha chain [KO:K01695] [EC:4.2.1.20]
ETAA1_52060  trpB; Tryptophan synthase beta chain [KO:K01696] [EC:4.2.1.20]
ETAA1_54170  serA_2; D-3-phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
ETAA1_54660  gcvH_2; Glycine cleavage system H protein [KO:K02437]
ETAA1_58450  maoI; Primary amine oxidase precursor [KO:K00276] [EC:1.4.3.21]
ETAA1_62860  [KO:K15635] [EC:5.4.2.12]
Compound
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00037  Glycine
C00048  Glyoxylate
C00049  L-Aspartate
C00065  L-Serine
C00078  L-Tryptophan
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00109  2-Oxobutanoate
C00114  Choline
C00143  5,10-Methylenetetrahydrofolate
C00168  Hydroxypyruvate
C00188  L-Threonine
C00197  3-Phospho-D-glycerate
C00213  Sarcosine
C00258  D-Glycerate
C00263  L-Homoserine
C00300  Creatine
C00430  5-Aminolevulinate
C00441  L-Aspartate 4-semialdehyde
C00546  Methylglyoxal
C00576  Betaine aldehyde
C00581  Guanidinoacetate
C00631  2-Phospho-D-glycerate
C00719  Betaine
C00740  D-Serine
C00986  1,3-Diaminopropane
C01005  O-Phospho-L-serine
C01026  N,N-Dimethylglycine
C01102  O-Phospho-L-homoserine
C01242  [Protein]-S8-aminomethyldihydrolipoyllysine
C01888  Aminoacetone
C02051  Lipoylprotein
C02291  L-Cystathionine
C02737  Phosphatidylserine
C02972  Dihydrolipoylprotein
C03082  4-Phospho-L-aspartate
C03194  (R)-1-Aminopropan-2-ol
C03232  3-Phosphonooxypyruvate
C03283  L-2,4-Diaminobutanoate
C03508  L-2-Amino-3-oxobutanoic acid
C05519  L-Allothreonine
C06231  Ectoine
C06442  N(gamma)-Acetyldiaminobutyrate
C16432  5-Hydroxyectoine
C19929  N(alpha)-Acetyl-L-2,4-diaminobutyrate
C23135  (2S,3S)-2-Acetamido-3-hydroxy-4-aminobutyrate
C23136  4-Amino-L-allothreonine
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
PMID:11823218
  Authors
Kuhlmann AU, Bremer E.
  Title
Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp.
  Journal
Appl Environ Microbiol 68:772-83 (2002)
DOI:10.1128/AEM.68.2.772-783.2002
Reference
PMID:10473374
  Authors
Canovas D, Borges N, Vargas C, Ventosa A, Nieto JJ, Santos H.
  Title
Role of Ngamma-acetyldiaminobutyrate as an enzyme stabilizer and an intermediate in the biosynthesis of hydroxyectoine.
  Journal
Appl Environ Microbiol 65:3774-9 (1999)
DOI:10.1128/AEM.65.9.3774-3779.1999
Reference
PMID:17636255
  Authors
Bursy J, Pierik AJ, Pica N, Bremer E.
  Title
Osmotically induced synthesis of the compatible solute hydroxyectoine is mediated by an evolutionarily conserved ectoine hydroxylase.
  Journal
J Biol Chem 282:31147-55 (2007)
DOI:10.1074/jbc.M704023200
Reference
PMID:16707670
  Authors
Garcia-Estepa R, Argandona M, Reina-Bueno M, Capote N, Iglesias-Guerra F, Nieto JJ, Vargas C.
  Title
The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.
  Journal
J Bacteriol 188:3774-84 (2006)
DOI:10.1128/JB.00136-06
Reference
PMID:15470257
  Authors
Arevalo-Rodriguez M, Pan X, Boeke JD, Heitman J
  Title
FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation.
  Journal
Eukaryot Cell 3:1287-96 (2004)
DOI:10.1128/EC.3.5.1287-1296.2004
Reference
PMID:7639721
  Authors
Rees WD, Hay SM
  Title
The biosynthesis of threonine by mammalian cells: expression of a complete bacterial biosynthetic pathway in an animal cell.
  Journal
Biochem J 309 ( Pt 3):999-1007 (1995)
DOI:10.1042/bj3090999
Reference
PMID:11341914
  Authors
Jacques SL, Nieman C, Bareich D, Broadhead G, Kinach R, Honek JF, Wright GD
  Title
Characterization of yeast homoserine dehydrogenase, an antifungal target: the invariant histidine 309 is important for enzyme integrity.
  Journal
Biochim Biophys Acta 1544:28-41 (2001)
DOI:10.1016/S0167-4838(00)00203-X
Reference
PMID:15520012
  Authors
Chen X, Jhee KH, Kruger WD
  Title
Production of the neuromodulator H2S by cystathionine beta-synthase via the condensation of cysteine and homocysteine.
  Journal
J Biol Chem 279:52082-6 (2004)
DOI:10.1074/jbc.C400481200
Related
pathway
uli00010  Glycolysis / Gluconeogenesis
uli00020  Citrate cycle (TCA cycle)
uli00230  Purine metabolism
uli00250  Alanine, aspartate and glutamate metabolism
uli00270  Cysteine and methionine metabolism
uli00290  Valine, leucine and isoleucine biosynthesis
uli00300  Lysine biosynthesis
uli00330  Arginine and proline metabolism
uli00460  Cyanoamino acid metabolism
uli00470  D-Amino acid metabolism
uli00564  Glycerophospholipid metabolism
uli00620  Pyruvate metabolism
uli00630  Glyoxylate and dicarboxylate metabolism
uli00640  Propanoate metabolism
uli00680  Methane metabolism
uli00860  Porphyrin metabolism
uli00920  Sulfur metabolism
KO pathway
ko00260   

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