KEGG   PATHWAY: vim00010
Entry
vim00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Virgibacillus sp. MSP4-1
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vim00010  Glycolysis / Gluconeogenesis
vim00010

Module
vim_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:vim00010]
vim_M00002  Glycolysis, core module involving three-carbon compounds [PATH:vim00010]
vim_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vim00010]
vim_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vim00010]
Other DBs
GO: 0006096 0006094
Organism
Virgibacillus sp. MSP4-1 [GN:vim]
Gene
GWK91_07250  ROK family glucokinase [KO:K25026] [EC:2.7.1.2]
GWK91_09180  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
GWK91_08565  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
GWK91_11715  glpX; class II fructose-bisphosphatase [KO:K02446] [EC:3.1.3.11]
GWK91_16450  fructose bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
GWK91_10905  fba; class II fructose-1,6-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
GWK91_09830  triose-phosphate isomerase [KO:K01803] [EC:5.3.1.1]
GWK91_09840  gap; type I glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
GWK91_08480  glyceraldehyde-3-phosphate dehydrogenase [KO:K00150] [EC:1.2.1.59]
GWK91_09835  phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
GWK91_02850  histidine phosphatase family protein [KO:K15634] [EC:5.4.2.11]
GWK91_02315  histidine phosphatase family protein [KO:K15634] [EC:5.4.2.11]
GWK91_09825  2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
GWK91_09820  phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
GWK91_08560  pyk; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
GWK91_03740  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
GWK91_03745  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
GWK91_03750  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
GWK91_06875  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GWK91_03755  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GWK91_04865  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
GWK91_04870  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
GWK91_15765  glutathione-dependent formaldehyde dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
GWK91_06750  aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
GWK91_09720  aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
GWK91_10855  aldehyde dehydrogenase family protein [KO:K00128] [EC:1.2.1.3]
GWK91_10395  aldehyde dehydrogenase family protein [KO:K00138] [EC:1.2.1.-]
GWK91_15850  acyl--CoA ligase [KO:K01895] [EC:6.2.1.1]
GWK91_13260  acsA; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
GWK91_05145  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
GWK91_02445  galactose mutarotase [KO:K01785] [EC:5.1.3.3]
GWK91_10400  phospho-sugar mutase [KO:K01835] [EC:5.4.2.2]
GWK91_09080  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
GWK91_02260  PTS glucose transporter subunit IIA [KO:K02777] [EC:2.7.1.-]
GWK91_10705  PTS transporter subunit EIIC [KO:K02791] [EC:2.7.1.199 2.7.1.208]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vim00020  Citrate cycle (TCA cycle)
vim00030  Pentose phosphate pathway
vim00500  Starch and sucrose metabolism
vim00620  Pyruvate metabolism
vim00640  Propanoate metabolism
vim00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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