KEGG   PATHWAY: vsy00030
Entry
vsy00030                    Pathway                                
Name
Pentose phosphate pathway - Vibrio syngnathi
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vsy00030  Pentose phosphate pathway
vsy00030

Module
vsy_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:vsy00030]
vsy_M00005  PRPP biosynthesis, ribose-5P => PRPP [PATH:vsy00030]
vsy_M00006  Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P [PATH:vsy00030]
vsy_M00007  Pentose phosphate pathway, non-oxidative phase, fructose-6P => ribose-5P [PATH:vsy00030]
Other DBs
GO: 0006098
Organism
Vibrio syngnathi [GN:vsy]
Gene
K08M4_02100  pfkA; 6-phosphofructokinase isozyme 1 [KO:K00850] [EC:2.7.1.11]
K08M4_02160  glpX; Fructose-1,6-bisphosphatase 1 class 2 [KO:K02446] [EC:3.1.3.11]
K08M4_02520  rpe_1; Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
K08M4_03420  fbp; Fructose-1,6-bisphosphatase class 1 [KO:K03841] [EC:3.1.3.11]
K08M4_04530  tktA_1; Transketolase 1 [KO:K00615] [EC:2.2.1.1]
K08M4_04620  fbaA; Fructose-bisphosphate aldolase class 2 [KO:K01624] [EC:4.1.2.13]
K08M4_04680  rpiA_1; Ribose-5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
K08M4_06420  deoC; Deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
K08M4_06440  deoB; Phosphopentomutase [KO:K01839] [EC:5.4.2.7]
K08M4_07550  prs; Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
K08M4_12360  eda_1; Putative KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
K08M4_12370  kdgK_1; 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
K08M4_16180  gndA_1; 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
K08M4_16190  pgl_2; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
K08M4_16200  zwf; Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
K08M4_21320  pgm; Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
K08M4_26850  pgi; Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
K08M4_28120  talB; Transaldolase B [KO:K00616] [EC:2.2.1.2]
K08M4_28130  tktA_2; Transketolase 1 [KO:K00615] [EC:2.2.1.1]
K08M4_28140  rpiA_2; Ribose-5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
K08M4_30610  eda_2; Putative KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
K08M4_30620  kdgK_3; 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
K08M4_33770  gntK; Thermoresistant gluconokinase [KO:K00851] [EC:2.7.1.12]
K08M4_33780  gndA_2; 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
K08M4_34320  tktA_3; Transketolase 1 [KO:K00615] [EC:2.2.1.1]
K08M4_34330  tal; Transaldolase [KO:K00616] [EC:2.2.1.2]
K08M4_38840  rbsK; Ribokinase [KO:K00852] [EC:2.7.1.15]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
vsy00010  Glycolysis / Gluconeogenesis
vsy00040  Pentose and glucuronate interconversions
vsy00052  Galactose metabolism
vsy00230  Purine metabolism
vsy00240  Pyrimidine metabolism
vsy00340  Histidine metabolism
vsy00630  Glyoxylate and dicarboxylate metabolism
vsy00750  Vitamin B6 metabolism
KO pathway
ko00030   

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