KEGG   PATHWAY: yal00030
Entry
yal00030                    Pathway                                
Name
Pentose phosphate pathway - Yersinia aldovae
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
yal00030  Pentose phosphate pathway
yal00030

Module
yal_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:yal00030]
yal_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:yal00030]
yal_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:yal00030]
yal_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:yal00030]
yal_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:yal00030]
yal_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:yal00030]
Other DBs
GO: 0006098
Organism
Yersinia aldovae [GN:yal]
Gene
AT01_1029  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
AT01_1429  [KO:K01839] [EC:5.4.2.7]
AT01_1728  rpiA; ribose 5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
AT01_1734  fbaA; fructose-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
AT01_1737  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
AT01_2145  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
AT01_2384  glpX; fructose-1,6-bisphosphatase, class II [KO:K02446] [EC:3.1.3.11]
AT01_2391  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
AT01_2471  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
AT01_2530  [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
AT01_2617  [KO:K00874] [EC:2.7.1.45]
AT01_2649  [KO:K00851] [EC:2.7.1.12]
AT01_2704  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
AT01_2944  [KO:K03841] [EC:3.1.3.11]
AT01_2990  phnN; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN [KO:K05774] [EC:2.7.4.23]
AT01_3092  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
AT01_3094  deoB; phosphopentomutase [KO:K01839] [EC:5.4.2.7]
AT01_3121  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
AT01_3506  pfkB; phosphofructokinase [KO:K16370] [EC:2.7.1.11]
AT01_3557  [KO:K19813] [EC:1.1.5.9]
AT01_3780  pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
AT01_3843  [KO:K07404] [EC:3.1.1.31]
AT01_3989  gnd; 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
AT01_42  kbaY; D-tagatose-1,6-bisphosphate aldolase subunit KbaY [KO:K01624] [EC:4.1.2.13]
AT01_577  eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein [KO:K01625] [EC:4.1.2.14 4.1.3.42]
AT01_578  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
AT01_624  prs; ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
yal00010  Glycolysis / Gluconeogenesis
yal00040  Pentose and glucuronate interconversions
yal00052  Galactose metabolism
yal00230  Purine metabolism
yal00240  Pyrimidine metabolism
yal00340  Histidine metabolism
yal00630  Glyoxylate and dicarboxylate metabolism
yal00750  Vitamin B6 metabolism
KO pathway
ko00030   

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