KEGG   PATHWAY: ykr00630
Entry
ykr00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Yersinia rochesterensis
Class
Metabolism; Carbohydrate metabolism
Pathway map
ykr00630  Glyoxylate and dicarboxylate metabolism
ykr00630

Module
ykr_M00012  Glyoxylate cycle [PATH:ykr00630]
ykr_M00621  Glycine cleavage system [PATH:ykr00630]
Other DBs
GO: 0046487 0043648
Organism
Yersinia rochesterensis [GN:ykr]
Gene
CH54_2906  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
CH54_2204  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
CH54_2905  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
CH54_2000  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
CH54_1152  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CH54_493  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
CH54_1750  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CH54_3956  catalase family protein [KO:K03781] [EC:1.11.1.6]
CH54_644  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
CH54_2481  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
CH54_2301  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
CH54_2566  glnA; glutamine synthetase, type I [KO:K01915] [EC:6.3.1.2]
CH54_1475  beta-eliminating lyase family protein [KO:K00600] [EC:2.1.2.1]
CH54_3408  gcvP; glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
CH54_3406  gcvT; glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
CH54_2708  pyridine nucleotide-disulfide oxidoreductase family protein [KO:K00382] [EC:1.8.1.4]
CH54_1754  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CH54_3407  gcvH; glycine cleavage system H protein [KO:K02437]
CH54_2078  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
CH54_2077  glycerate kinase family protein [KO:K00865] [EC:2.7.1.165]
CH54_611  eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein [KO:K01625] [EC:4.1.2.14 4.1.3.42]
CH54_2459  fdnG; formate dehydrogenase-N alpha subunit [KO:K00123] [EC:1.17.1.9]
CH54_2460  molybdopterin oxidoreductase Fe4S4 domain protein [KO:K00123] [EC:1.17.1.9]
CH54_2458  fdxH; formate dehydrogenase, beta subunit [KO:K00124]
CH54_2457  formate dehydrogenase, gamma subunit [KO:K00127]
CH54_561  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
CH54_675  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ykr00010  Glycolysis / Gluconeogenesis
ykr00020  Citrate cycle (TCA cycle)
ykr00030  Pentose phosphate pathway
ykr00053  Ascorbate and aldarate metabolism
ykr00071  Fatty acid degradation
ykr00230  Purine metabolism
ykr00250  Alanine, aspartate and glutamate metabolism
ykr00260  Glycine, serine and threonine metabolism
ykr00620  Pyruvate metabolism
ykr00710  Carbon fixation in photosynthetic organisms
ykr00750  Vitamin B6 metabolism
ykr00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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