KEGG   PATHWAY: ypi00030
Entry
ypi00030                    Pathway                                
Name
Pentose phosphate pathway - Yersinia pseudotuberculosis IP 31758 (serotype O:1b)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ypi00030  Pentose phosphate pathway
ypi00030

Module
ypi_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:ypi00030]
ypi_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:ypi00030]
ypi_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:ypi00030]
ypi_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:ypi00030]
ypi_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:ypi00030]
ypi_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:ypi00030]
ypi_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:ypi00030]
Other DBs
GO: 0006098
Organism
Yersinia pseudotuberculosis IP 31758 (serotype O:1b) [GN:ypi]
Gene
YpsIP31758_0302  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
YpsIP31758_2022  zwf; glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
YpsIP31758_2846  pgl; 6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
YpsIP31758_2436  gnd; 6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
YpsIP31758_3962  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
YpsIP31758_3248  putative transketolase, C-terminal subunit [KO:K00615] [EC:2.2.1.1]
YpsIP31758_3249  putative transketolase. N-terminal subunit [KO:K00615] [EC:2.2.1.1]
YpsIP31758_0847  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
YpsIP31758_3472  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
YpsIP31758_0855  rpiA2; ribose 5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
YpsIP31758_2690  rpiA1; ribose 5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
YpsIP31758_3289  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
YpsIP31758_2652  deoC2; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
YpsIP31758_3498  deoC1; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
YpsIP31758_0350  putative deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
YpsIP31758_0008  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
YpsIP31758_0349  putative ribokinase [KO:K00852] [EC:2.7.1.15]
YpsIP31758_3496  deoB; phosphopentomutase [KO:K01839] [EC:5.4.2.7]
YpsIP31758_1099  pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
YpsIP31758_3567  putative phosphonate metabolism ribose 1,5-bisphosphokinase PhnN [KO:K05774] [EC:2.7.4.23]
YpsIP31758_2070  prs; ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
YpsIP31758_1476  edd; phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
YpsIP31758_2021  eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
YpsIP31758_4137  tkrA; 2-ketogluconate reductase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
YpsIP31758_4020  gntK; thermoresistant gluconokinase [KO:K00851] [EC:2.7.1.12]
YpsIP31758_1469  idnK; thermosensitive gluconokinase [KO:K00851] [EC:2.7.1.12]
YpsIP31758_4062  kdgK; 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
YpsIP31758_0850  fbaA; fructose-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
YpsIP31758_4026  putative fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
YpsIP31758_3621  fbp; fructose-1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
YpsIP31758_0100  glpX; fructose-1,6-bisphosphatase, class II [KO:K02446] [EC:3.1.3.11]
YpsIP31758_0089  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
ypi00010  Glycolysis / Gluconeogenesis
ypi00040  Pentose and glucuronate interconversions
ypi00052  Galactose metabolism
ypi00230  Purine metabolism
ypi00240  Pyrimidine metabolism
ypi00340  Histidine metabolism
ypi00630  Glyoxylate and dicarboxylate metabolism
ypi00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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