KEGG   PATHWAY: zof00920
Entry
zof00920                    Pathway                                
Name
Sulfur metabolism - Zingiber officinale (ginger)
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
zof00920  Sulfur metabolism
zof00920

Module
zof_M00021  Cysteine biosynthesis, serine => cysteine [PATH:zof00920]
zof_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:zof00920]
Other DBs
GO: 0006790
Organism
Zingiber officinale (ginger) [GN:zof]
Gene
122042808  ATP sulfurylase 1, chloroplastic-like [KO:K13811] [EC:2.7.7.4 2.7.1.25]
121992911  ATP sulfurylase 2-like [KO:K13811] [EC:2.7.7.4 2.7.1.25]
122047324  ATP sulfurylase 1, chloroplastic-like [KO:K13811] [EC:2.7.7.4 2.7.1.25]
121996908  ATP sulfurylase 2-like [KO:K13811] [EC:2.7.7.4 2.7.1.25]
121982334  ATP sulfurylase 1, chloroplastic-like [KO:K13811] [EC:2.7.7.4 2.7.1.25]
121986218  ATP sulfurylase 1, chloroplastic-like [KO:K13811] [EC:2.7.7.4 2.7.1.25]
122017746  bifunctional adenosine 5'-phosphosulfate phosphorylase/adenylylsulfatase HINT4-like [KO:K22966] [EC:2.7.7.5 3.6.2.1]
122008574  bifunctional adenosine 5'-phosphosulfate phosphorylase/adenylylsulfatase HINT4-like [KO:K22966] [EC:2.7.7.5 3.6.2.1]
122009015  adenylyl-sulfate kinase 3-like isoform X1 [KO:K00860] [EC:2.7.1.25]
122014223  adenylyl-sulfate kinase 3-like [KO:K00860] [EC:2.7.1.25]
121984394  adenylyl-sulfate kinase 3-like isoform X1 [KO:K00860] [EC:2.7.1.25]
122014622  adenylyl-sulfate kinase 3-like [KO:K00860] [EC:2.7.1.25]
122038342  adenylyl-sulfate kinase 3-like isoform X1 [KO:K00860] [EC:2.7.1.25]
122051292  PAP-specific phosphatase HAL2-like isoform X1 [KO:K01082] [EC:3.1.3.7]
122055422  putative PAP-specific phosphatase, mitochondrial [KO:K01082] [EC:3.1.3.7]
122055792  PAP-specific phosphatase HAL2-like isoform X1 [KO:K01082] [EC:3.1.3.7]
122051427  SAL1 phosphatase-like [KO:K15422] [EC:3.1.3.7 3.1.3.57]
122055668  SAL1 phosphatase-like [KO:K15422] [EC:3.1.3.7 3.1.3.57]
122045204  probable 5'-adenylylsulfate reductase 1, chloroplastic [KO:K05907] [EC:1.8.4.9]
121978143  5'-adenylylsulfate reductase 1, chloroplastic-like [KO:K05907] [EC:1.8.4.9]
122050702  probable 5'-adenylylsulfate reductase 1, chloroplastic [KO:K05907] [EC:1.8.4.9]
122020514  probable 5'-adenylylsulfate reductase 1, chloroplastic [KO:K05907] [EC:1.8.4.9]
121972637  probable 5'-adenylylsulfate reductase 1, chloroplastic [KO:K05907] [EC:1.8.4.9]
122024581  probable 5'-adenylylsulfate reductase 1, chloroplastic [KO:K05907] [EC:1.8.4.9]
122040663  probable 5'-adenylylsulfate reductase 1, chloroplastic [KO:K05907] [EC:1.8.4.9]
122049442  sulfite oxidase-like [KO:K00387] [EC:1.8.3.1]
121982231  sulfite oxidase-like [KO:K00387] [EC:1.8.3.1]
121986126  sulfite oxidase-like isoform X1 [KO:K00387] [EC:1.8.3.1]
122040023  sulfite oxidase-like [KO:K00387] [EC:1.8.3.1]
122027213  sulfite reductase [ferredoxin], chloroplastic-like isoform X1 [KO:K00392] [EC:1.8.7.1]
122027230  sulfite reductase [ferredoxin], chloroplastic-like isoform X1 [KO:K00392] [EC:1.8.7.1]
122029677  sulfite reductase [ferredoxin], chloroplastic-like isoform X1 [KO:K00392] [EC:1.8.7.1]
122029683  sulfite reductase [ferredoxin], chloroplastic-like isoform X1 [KO:K00392] [EC:1.8.7.1]
122031891  sulfite reductase [ferredoxin], chloroplastic-like isoform X1 [KO:K00392] [EC:1.8.7.1]
122034475  sulfite reductase [ferredoxin], chloroplastic-like [KO:K00392] [EC:1.8.7.1]
121983805  sulfite reductase [ferredoxin], chloroplastic-like [KO:K00392] [EC:1.8.7.1]
122036987  sulfite reductase [ferredoxin], chloroplastic-like [KO:K00392] [EC:1.8.7.1]
122042013  persulfide dioxygenase ETHE1 homolog, mitochondrial-like isoform X1 [KO:K17725] [EC:1.13.11.18]
122046529  persulfide dioxygenase ETHE1 homolog, mitochondrial-like isoform X1 [KO:K17725] [EC:1.13.11.18]
122037296  persulfide dioxygenase ETHE1 homolog, mitochondrial-like [KO:K17725] [EC:1.13.11.18]
122041817  thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial-like isoform X1 [KO:K01011] [EC:2.8.1.1 2.8.1.2]
122006714  thiosulfate/3-mercaptopyruvate sulfurtransferase 2-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
122046338  thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial-like isoform X1 [KO:K01011] [EC:2.8.1.1 2.8.1.2]
122002465  thiosulfate/3-mercaptopyruvate sulfurtransferase 2-like [KO:K01011] [EC:2.8.1.1 2.8.1.2]
122003911  probable serine acetyltransferase 3 [KO:K00640] [EC:2.3.1.30]
122025615  probable serine acetyltransferase 1 [KO:K00640] [EC:2.3.1.30]
122044406  probable serine acetyltransferase 1 [KO:K00640] [EC:2.3.1.30]
121976443  probable serine acetyltransferase 2 [KO:K00640] [EC:2.3.1.30]
122048983  probable serine acetyltransferase 5 [KO:K00640] [EC:2.3.1.30]
122011912  probable serine acetyltransferase 4 [KO:K00640] [EC:2.3.1.30]
122051505  probable serine acetyltransferase 1 [KO:K00640] [EC:2.3.1.30]
122020959  probable serine acetyltransferase 1 [KO:K00640] [EC:2.3.1.30]
121971231  probable serine acetyltransferase 2 isoform X1 [KO:K00640] [EC:2.3.1.30]
122056030  probable serine acetyltransferase 1 [KO:K00640] [EC:2.3.1.30]
121988821  bifunctional L-3-cyanoalanine synthase/cysteine synthase D2-like [KO:K01738] [EC:2.5.1.47]
122027138  cysteine synthase-like isoform X1 [KO:K01738] [EC:2.5.1.47]
122006615  cysteine synthase-like [KO:K01738] [EC:2.5.1.47]
122028604  cysteine synthase-like isoform X1 [KO:K01738] [EC:2.5.1.47]
122008220  cysteine synthase-like [KO:K01738] [EC:2.5.1.47]
122008406  bifunctional cystathionine gamma-lyase/cysteine synthase-like [KO:K01738] [EC:2.5.1.47]
122032752  cysteine synthase [KO:K01738] [EC:2.5.1.47]
121981846  cysteine synthase-like [KO:K01738] [EC:2.5.1.47]
122051235  cysteine synthase 2-like [KO:K01738] [EC:2.5.1.47]
122014505  cysteine synthase-like [KO:K01738] [EC:2.5.1.47]
121985694  cysteine synthase-like [KO:K01738] [EC:2.5.1.47]
122038750  bifunctional L-3-cyanoalanine synthase/cysteine synthase D1-like [KO:K01738] [EC:2.5.1.47]
122055848  cysteine synthase 2-like [KO:K01738] [EC:2.5.1.47]
122002360  cysteine synthase-like [KO:K01738] [EC:2.5.1.47]
122045512  bifunctional L-3-cyanoalanine synthase/cysteine synthase 2, mitochondrial-like [KO:K13034] [EC:2.5.1.47 4.4.1.9]
122041004  L-3-cyanoalanine synthase 2, mitochondrial-like [KO:K13034] [EC:2.5.1.47 4.4.1.9]
122042325  selenium-binding protein 1-like [KO:K17285] [EC:1.8.3.4]
122046839  selenium-binding protein 1-like [KO:K17285] [EC:1.8.3.4]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
zof00260  Glycine, serine and threonine metabolism
zof00270  Cysteine and methionine metabolism
KO pathway
ko00920   
LinkDB

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