Entry
Name
Phagocytosis - Myotis myotis (greater mouse-eared bat)
Description
Phagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is formed when the specific receptors on the phagocyte surface recognize ligands on the particle surface. After formation, nascent phagosomes progressively acquire digestive characteristics. This maturation of phagosomes involves regulated interaction with the other membrane organelles, including recycling endosomes, late endosomes and lysosomes. The fusion of phagosomes and lysosomes releases toxic products that kill most bacteria and degrade them into fragments. However, some bacteria have strategies to escape the bactericidal mechanisms associated with phagocytosis and survive within host phagocytes.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Other DBs
Organism
Myotis myotis (greater mouse-eared bat) [GN:
mmyo ]
Gene
118649996 VPS18; vacuolar protein sorting-associated protein 18 homolog isoform X1 [KO:K20181 ]
118650244 GABARAPL1; gamma-aminobutyric acid receptor-associated protein-like 1 [KO:K08341 ]
118650310 ATP6V1E1; V-type proton ATPase subunit E 1 isoform X1 [KO:K02150 ]
118650404 SNAP23; synaptosomal-associated protein 23 isoform X1 [KO:K08508 ]
118651202 MSR1; macrophage scavenger receptor types I and II isoform X1 [KO:K06558 ]
118651403 OLR1; oxidized low-density lipoprotein receptor 1 isoform X1 [KO:K08763 ]
118651797 LAMP1; lysosome-associated membrane glycoprotein 1 isoform X1 [KO:K06528 ]
118651802 CLEC7A; C-type lectin domain family 7 member A isoform X1 [KO:K10074 ]
118652114 M6PR; cation-dependent mannose-6-phosphate receptor isoform X1 [KO:K10089 ]
118653371 LAMP2; lysosome-associated membrane glycoprotein 2 isoform X1 [KO:K06528 ]
118653868 ATG4A; cysteine protease ATG4A isoform X1 [KO:K08342 ] [EC:3.4.22.-]
118653922 VAMP7; vesicle-associated membrane protein 7 isoform X1 [KO:K08515 ]
118655501 ATP6V0A2; V-type proton ATPase 116 kDa subunit a2 isoform X1 [KO:K02154 ]
118655512 SCARB1; scavenger receptor class B member 1 isoform X1 [KO:K13885 ]
118655969 ATP6V0C; V-type proton ATPase 16 kDa proteolipid subunit [KO:K02155 ]
118656203 PIK3R1; phosphatidylinositol 3-kinase regulatory subunit alpha isoform X1 [KO:K02649 ]
118657573 PIK3R2; phosphatidylinositol 3-kinase regulatory subunit beta isoform X1 [KO:K02649 ]
118657696 RAC1; ras-related C3 botulinum toxin substrate 1 isoform X1 [KO:K04392 ]
118657996 ATP6V1B2; V-type proton ATPase subunit B, brain isoform [KO:K02147 ]
118658080 CCZ1; vacuolar fusion protein CCZ1 homolog isoform X1 [KO:K27045 ]
118659088 TIMD4; T-cell immunoglobulin and mucin domain-containing protein 4 isoform X1 [KO:K26936 ]
118659331 ATG4D; cysteine protease ATG4D isoform X1 [KO:K08342 ] [EC:3.4.22.-]
118661343 DYNC1I2; cytoplasmic dynein 1 intermediate chain 2 isoform X1 [KO:K10415 ]
118661691 PLA2R1; secretory phospholipase A2 receptor isoform X1 [KO:K06560 ]
118661907 ATG4B; cysteine protease ATG4B isoform X1 [KO:K08342 ] [EC:3.4.22.-]
118662552 OSBPL1A; oxysterol-binding protein-related protein 1 isoform X1 [KO:K20174 ]
118662561 MAP1LC3A; microtubule-associated proteins 1A/1B light chain 3A [KO:K10435 ]
118662873 SEC61A1; protein transport protein Sec61 subunit alpha [KO:K10956 ]
118663097 VPS16; vacuolar protein sorting-associated protein 16 homolog isoform X1 [KO:K20180 ]
118663360 DYNLRB1; dynein light chain roadblock-type 1 isoform X1 [KO:K10419 ]
118663703 OSBPL2; oxysterol-binding protein-related protein 2 isoform X1 [KO:K20174 ]
118664198 VPS11; vacuolar protein sorting-associated protein 11 homolog isoform X1 [KO:K20179 ]
118664379 DYNC2H1; cytoplasmic dynein 2 heavy chain 1 isoform X1 [KO:K10414 ]
118664620 UVRAG; UV radiation resistance-associated gene protein isoform X1 [KO:K21249 ]
118665902 SEC61G; protein transport protein Sec61 subunit gamma isoform X1 [KO:K07342 ]
118665970 VPS41; vacuolar protein sorting-associated protein 41 homolog isoform X1 [KO:K20184 ]
118666196 DYNC1I1; cytoplasmic dynein 1 intermediate chain 1 isoform X1 [KO:K10415 ]
118666617 ATP6V0A4; V-type proton ATPase 116 kDa subunit a isoform X1 [KO:K02154 ]
118667057 GAPVD1; GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1 [KO:K27566 ]
118668066 ATG7; ubiquitin-like modifier-activating enzyme ATG7 isoform X1 [KO:K08337 ]
118668125 PIK3CB; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform isoform X1 [KO:K00922 ] [EC:2.7.1.153 ]
118668268 DYNC1LI1; cytoplasmic dynein 1 light intermediate chain 1 isoform X1 [KO:K10416 ]
118668877 ATP6V1B1; V-type proton ATPase subunit B, kidney isoform [KO:K02147 ]
118669053 DYNC2LI1; cytoplasmic dynein 2 light intermediate chain 1 [KO:K10417 ]
118669278 ATP6V1C2; V-type proton ATPase subunit C 2 isoform X1 [KO:K02148 ]
118670702 ATP6V1C1; V-type proton ATPase subunit C 1 isoform X1 [KO:K02148 ]
118671503 ATP6V0A1; V-type proton ATPase 116 kDa subunit a1 isoform X1 [KO:K02154 ]
118672113 VAMP2; vesicle-associated membrane protein 2 isoform X1 [KO:K13504 ]
118672472 HGS; hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1 [KO:K12182 ]
118673015 FCGR1A; high affinity immunoglobulin gamma Fc receptor I [KO:K06498 ]
118674186 DYNC1LI2; cytoplasmic dynein 1 light intermediate chain 2 isoform X1 [KO:K10416 ]
118674231 MON1B; vacuolar fusion protein MON1 homolog B isoform X1 [KO:K20195 ]
118674235 MAP1LC3B; microtubule-associated proteins 1A/1B light chain 3B isoform X1 [KO:K10435 ]
118674257 GABARAPL2; gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341 ]
118675045 PIK3CA; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform isoform X1 [KO:K00922 ] [EC:2.7.1.153 ]
118676261 RUBCN; run domain Beclin-1-interacting and cysteine-rich domain-containing protein isoform X1 [KO:K19330 ]
118676405 VAMP3; vesicle-associated membrane protein 3 isoform X1 [KO:K13505 ]
118676845 ATP6V0B; V-type proton ATPase 21 kDa proteolipid subunit [KO:K03661 ]
118677323 SEC61A2; protein transport protein Sec61 subunit alpha isoform X1 [KO:K10956 ]
118677590 PIK3CD; phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform isoform X1 [KO:K00922 ] [EC:2.7.1.153 ]
118678263 VPS33A; vacuolar protein sorting-associated protein 33A isoform X1 [KO:K20182 ]
Compound
C04549 1-Phosphatidyl-1D-myo-inositol 3-phosphate
Reference
Authors
Stuart LM, Ezekowitz RA
Title
Phagocytosis: elegant complexity.
Journal
Reference
Authors
Tjelle TE, Lovdal T, Berg T
Title
Phagosome dynamics and function.
Journal
Reference
Authors
Dupuy AG, Caron E
Title
Integrin-dependent phagocytosis: spreading from microadhesion to new concepts.
Journal
Reference
Authors
Brumell JH, Grinstein S
Title
Salmonella redirects phagosomal maturation.
Journal
Reference
Authors
Huynh KK, Eskelinen EL, Scott CC, Malevanets A, Saftig P, Grinstein S
Title
LAMP proteins are required for fusion of lysosomes with phagosomes.
Journal
Reference
Authors
Luzio JP, Pryor PR, Bright NA
Title
Lysosomes: fusion and function.
Journal
Reference
Authors
Sumimoto H
Title
Structure, regulation and evolution of Nox-family NADPH oxidases that produce reactive oxygen species.
Journal
Reference
Authors
Depierre M, Pompili C, Niedergang F
Title
Phagocytosis at a glance.
Journal
Reference
Authors
Lee HJ, Woo Y, Hahn TW, Jung YM, Jung YJ
Title
Formation and Maturation of the Phagosome: A Key Mechanism in Innate Immunity against Intracellular Bacterial Infection.
Journal
Reference
Authors
Heckmann BL, Green DR
Title
LC3-associated phagocytosis at a glance.
Journal
Reference
Authors
Yuan J, Zhang Q, Chen S, Yan M, Yue L
Title
LC3-Associated Phagocytosis in Bacterial Infection.
Journal
Reference
Authors
Pena-Martinez C, Rickman AD, Heckmann BL
Title
Beyond autophagy: LC3-associated phagocytosis and endocytosis.
Journal
Reference
Authors
Othman A, Sekheri M, Filep JG
Title
Roles of neutrophil granule proteins in orchestrating inflammation and immunity.
Journal
Reference
Authors
Rosales C
Title
Neutrophil: A Cell with Many Roles in Inflammation or Several Cell Types?
Journal
Reference
Authors
Naish E, Wood AJ, Stewart AP, Routledge M, Morris AC, Chilvers ER, Lodge KM
Title
The formation and function of the neutrophil phagosome.
Journal
Reference
Authors
Skubitz KM
Title
The role of CEACAMs in neutrophil function.
Journal
Reference
Authors
Weiss G, Schaible UE
Title
Macrophage defense mechanisms against intracellular bacteria.
Journal
Reference
Authors
Cruz FM, Chan A, Rock KL
Title
Pathways of MHC I cross-presentation of exogenous antigens.
Journal
Related pathway
mmyo04610 Complement and coagulation cascades
mmyo04612 Antigen processing and presentation
mmyo04613 Neutrophil extracellular trap formation
mmyo04620 Toll-like receptor signaling pathway
mmyo04666 Fc gamma R-mediated phagosome formation
KO pathway