KEGG   PATHWAY: ica00020
Entry
ica00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Intrasporangium calvum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ica00020  Citrate cycle (TCA cycle)
ica00020

Module
ica_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ica00020]
ica_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ica00020]
ica_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ica00020]
ica_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ica00020]
ica_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ica00020]
Other DBs
GO: 0006099
Organism
Intrasporangium calvum [GN:ica]
Gene
Intca_2606  citrate synthase [KO:K01647] [EC:2.3.3.1]
Intca_0823  citrate synthase [KO:K01647] [EC:2.3.3.1]
Intca_0748  citrate synthase [KO:K01647] [EC:2.3.3.1]
Intca_1927  aconitase [KO:K01681] [EC:4.2.1.3]
Intca_0556  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Intca_2477  2-oxoglutarate dehydrogenase E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
Intca_2017  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Intca_2203  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Intca_0709  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Intca_0708  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Intca_1063  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Intca_1062  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Intca_1202  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Intca_1201  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Intca_1203  succinate dehydrogenase subunit C [KO:K00241]
Intca_2699  fumarase [KO:K01676] [EC:4.2.1.2]
Intca_0703  fumarase [KO:K01679] [EC:4.2.1.2]
Intca_1119  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Intca_R0022  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Intca_0310  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Intca_2059  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Intca_3136  Dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Intca_2018  2-oxoglutarate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
Intca_3070  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ica00010  Glycolysis / Gluconeogenesis
ica00053  Ascorbate and aldarate metabolism
ica00061  Fatty acid biosynthesis
ica00071  Fatty acid degradation
ica00190  Oxidative phosphorylation
ica00220  Arginine biosynthesis
ica00250  Alanine, aspartate and glutamate metabolism
ica00280  Valine, leucine and isoleucine degradation
ica00350  Tyrosine metabolism
ica00470  D-Amino acid metabolism
ica00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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