KEGG   DISEASE: Neurodevelopmental disorder with defects of ubiquitin-proteasome system
Entry
H02715                      Disease                                
Name
Neurodevelopmental disorder with defects of ubiquitin-proteasome system
  Subgroup
NED with spasticity and poor growth (NEDSG)
NED with hypotonia, seizures, and absent language (NDHSAL)
NED with or without autism or seizures (NEDAUS) [DS:H02864]
NED with regression, abnormal movements, loss of speech, and seizures (NEDAMSS)
NED with hypotonia and gross motor and speech delay (NEDHMS)
NED with absent speech and movement and behavioral abnormalities (NEDSMB)
NED with seizures, spasticity, and complete or partial agenesis of the corpus callosum (NEDSSCC)
NED with impaired language, behavioral abnormalities, and dysmorphic facies (NEDLBF)
Nabais Sa-de Vries syndrome (NSDVS)
Neurodevelopmental, jaw, eye, and digital syndrome (NEDJED)
Buratti-Harel syndrome (BURHAS)
NED with dysmorphic facies and ischiopubic hypoplasia (NEDFIH)
X-linked multiple congenital anomalies-neurodevelopmental syndrome (MCAND)
NED with hypotonia and seizures (NEDHS)
NED with microcephaly, hypotonia, and absent language (NEDMHAL)
Stankiewicz-Isidor syndrome (STISS)
Birk-Aharoni syndrome (BKAH)
Cardiac, facial, and digital anomalies with developmental delay (CAFDADD)
NED with behavioral, ear, and skeletal abnormalities (NEDBES)
Tayoun-Maawali syndrome (TYMAS)
NED with speech delay and behavioral abnormalities (NEDSBH)
Description
The ubiquitin-proteasome system (UPS) is the major proteolytic system that controls protein degradation and it regulates many cellular processes, such as cell division, gene expression and signal transduction. Many neurodevelopmental disorders caused by mutations in genes encoding components of the UPS have been reported.
Category
Congenital malformation
Brite
Human diseases in ICD-11 classification [BR:br08403]
 20 Developmental anomalies
  LD90  Conditions with disorders of intellectual development as a relevant clinical feature
   H02715  Neurodevelopmental disorder with defects of ubiquitin-proteasome system
Pathway
hsa04120 Ubiquitin mediated proteolysis   
hsa03050 Proteasome   
Gene
(NEDSG) UFC1 [HSA:51506] [KO:K12165]
(NDHSAL) HECW2 [HSA:57520] [KO:K12168]
(NEDAUS) CUL3 [HSA:8452] [KO:K03869]
(NEDAMSS) IRF2BPL [HSA:64207] [KO:K22383]
(NEDHMS) UBE4A [HSA:9354] [KO:K10596]
(NEDSMB) UBE3C [HSA:9690] [KO:K10589]
(NEDSSCC) HECTD4 [HSA:283450] [KO:K17849]
(NEDLBF) UBAP2L [HSA:9898] [KO:K26545]
(NSDVS1/2) SPOP [HSA:8405] [KO:K10523]
(NEDJED) FBXW11 [HSA:23291] [KO:K03362]
(BURHAS) SIAH1 [HSA:6477] [KO:K04506]
(NEDFIH) NAE1 [HSA:8883] [KO:K04532]
(MCAND) OTUD5 [HSA:55593] [KO:K12655]
(NEDHS) OTUD7A [HSA:161725] [KO:K11860]
(NEDMHAL) PSMB1 [HSA:5689] [KO:K02732]
(STISS) PSMD12 [HSA:5718] [KO:K03035]
(BKAH) PSMC1 [HSA:5700] [KO:K03062]
(CAFDADD) TRAF7 [HSA:84231] [KO:K10646]
(NEDBES) FEM1B [HSA:10116] [KO:K10349]
(TYMAS) FBXO22 [HSA:26263] [KO:K10302]
(NEDSBH) UBR5 [HSA:51366] [KO:K10593]
Other DBs
ICD-11: LD90.Y
OMIM: 618076 617268 619239 618088 619639 620270 620250 620494 618828 618829 618914 619314 620210 301056 620790 620038 617516 620071 618164 621263 621184 621372
Reference
  Authors
Ebstein F, Kury S, Papendorf JJ, Kruger E
  Title
Neurodevelopmental Disorders (NDD) Caused by Genomic Alterations of the Ubiquitin-Proteasome System (UPS): the Possible Contribution of Immune  Dysregulation to Disease Pathogenesis.
  Journal
Front Mol Neurosci 14:733012 (2021)
DOI:10.3389/fnmol.2021.733012
Reference
PMID:29868776 (NEDSG)
  Authors
Nahorski MS, Maddirevula S, Ishimura R, Alsahli S, Brady AF, Begemann A, Mizushima T, Guzman-Vega FJ, Obata M, Ichimura Y, Alsaif HS, Anazi S, Ibrahim N, Abdulwahab F, Hashem M, Monies D, Abouelhoda M, Meyer BF, Alfadhel M, Eyaid W, Zweier M, Steindl K, Rauch A, Arold ST, Woods CG, Komatsu M, Alkuraya FS
  Title
Biallelic UFM1 and UFC1 mutations expand the essential role of ufmylation in brain development.
  Journal
Brain 141:1934-1945 (2018)
DOI:10.1093/brain/awy135
Reference
PMID:27389779 (NDHSAL)
  Authors
Berko ER, Cho MT, Eng C, Shao Y, Sweetser DA, Waxler J, Robin NH, Brewer F, Donkervoort S, Mohassel P, Bonnemann CG, Bialer M, Moore C, Wolfe LA, Tifft CJ, Shen Y, Retterer K, Millan F, Chung WK
  Title
De novo missense variants in HECW2 are associated with neurodevelopmental delay and hypotonia.
  Journal
J Med Genet 54:84-86 (2017)
DOI:10.1136/jmedgenet-2016-103943
Reference
PMID:32341456 (NEDAUS)
  Authors
Nakashima M, Kato M, Matsukura M, Kira R, Ngu LH, Lichtenbelt KD, van Gassen KLI, Mitsuhashi S, Saitsu H, Matsumoto N
  Title
De novo variants in CUL3 are associated with global developmental delays with or without infantile spasms.
  Journal
J Hum Genet 65:727-734 (2020)
DOI:10.1038/s10038-020-0758-2
Reference
PMID:30193138 (NEDAMSS)
  Authors
Marcogliese PC, Shashi V, Spillmann RC, Stong N, Rosenfeld JA, Koenig MK, Martinez-Agosto JA, Herzog M, Chen AH, Dickson PI, Lin HJ, Vera MU, Salamon N, Graham JM Jr, Ortiz D, Infante E, Steyaert W, Dermaut B, Poppe B, Chung HL, Zuo Z, Lee PT, Kanca O, Xia F, Yang Y, Smith EC, Jasien J, Kansagra S, Spiridigliozzi G, El-Dairi M, Lark R, Riley K, Koeberl DD, Golden-Grant K, Yamamoto S, Wangler MF, Mirzaa G, Hemelsoet D, Lee B, Nelson SF, Goldstein DB, Bellen HJ, Pena LDM
  Title
IRF2BPL Is Associated with Neurological Phenotypes.
  Journal
Am J Hum Genet 103:456 (2018)
DOI:10.1016/j.ajhg.2018.08.010
Reference
PMID:33420346 (NEDHMS)
  Authors
Melo US, Bonner D, Kent Lloyd KC, Moshiri A, Willis B, Lanoue L, Bower L, Leonard BC, Martins DJ, Gomes F, de Souza Leite F, Oliveira D, Kitajima JP, Monteiro FP, Zatz M, Menck CFM, Wheeler MT, Bernstein JA, Dumas K, Spiteri E, Di Donato N, Jahn A, Hashem M, Alsaif HS, Chedrawi A, Alkuraya FS, Kok F, Byers HM
  Title
Biallelic UBE4A loss-of-function variants cause intellectual disability and global developmental delay.
  Journal
Genet Med 23:661-668 (2021)
DOI:10.1038/s41436-020-01047-z
Reference
PMID:36401616 (NEDSMB, NEDSSCC)
  Authors
Faqeih EA, Alghamdi MA, Almahroos MA, Alharby E, Almuntashri M, Alshangiti AM, Clement P, Calame DG, Qebibo L, Burglen L, Doco-Fenzy M, Mastrangelo M, Torella A, Manti F, Nigro V, Alban Z, Alharbi GS, Hashmi JA, Alraddadi R, Alamri R, Mitani T, Magalie B, Coban-Akdemir Z, Geckinli BB, Pehlivan D, Romito A, Karageorgou V, Martini J, Colin E, Bonneau D, Bertoli-Avella A, Lupski JR, Pastore A, Peake RWA, Dallol A, Alfadhel M, Almontashiri NAM
  Title
Biallelic variants in HECT E3 paralogs, HECTD4 and UBE3C, encoding ubiquitin ligases cause neurodevelopmental disorders that overlap with Angelman syndrome.
  Journal
Genet Med 25:100323 (2023)
DOI:10.1016/j.gim.2022.10.006
Reference
PMID:35977029 (NEDLBF)
  Authors
Jia X, Zhang S, Tan S, Du B, He M, Qin H, Chen J, Duan X, Luo J, Chen F, Ouyang L, Wang J, Chen G, Yu B, Zhang G, Zhang Z, Lyu Y, Huang Y, Jiao J, Chen JYH, Swoboda KJ, Agolini E, Novelli A, Leoni C, Zampino G, Cappuccio G, Brunetti-Pierri N, Gerard B, Ginglinger E, Richer J, McMillan H, White-Brown A, Hoekzema K, Bernier RA, Kurtz-Nelson EC, Earl RK, Meddens C, Alders M, Fuchs M, Caumes R, Brunelle P, Smol T, Kuehl R, Day-Salvatore DL, Monaghan KG, Morrow MM, Eichler EE, Hu Z, Yuan L, Tan J, Xia K, Shen Y, Guo H
  Title
De novo variants in genes regulating stress granule assembly associate with neurodevelopmental disorders.
  Journal
Sci Adv 8:eabo7112 (2022)
DOI:10.1126/sciadv.abo7112
Reference
PMID:32109420 (NSDVS1/2)
  Authors
Nabais Sa MJ, El Tekle G, de Brouwer APM, Sawyer SL, Del Gaudio D, Parker MJ, Kanani F, van den Boogaard MH, van Gassen K, Van Allen MI, Wierenga K, Purcarin G, Elias ER, Begtrup A, Keller-Ramey J, Bernasocchi T, van de Wiel L, Gilissen C, Venselaar H, Pfundt R, Vissers LELM, Theurillat JP, de Vries BBA
  Title
De Novo Variants in SPOP Cause Two Clinically Distinct Neurodevelopmental Disorders.
  Journal
Am J Hum Genet 106:405-411 (2020)
DOI:10.1016/j.ajhg.2020.02.001
Reference
PMID:31402090 (NEDJED)
  Authors
Holt RJ, Young RM, Crespo B, Ceroni F, Curry CJ, Bellacchio E, Bax DA, Ciolfi A, Simon M, Fagerberg CR, van Binsbergen E, De Luca A, Memo L, Dobyns WB, Mohammed AA, Clokie SJH, Zazo Seco C, Jiang YH, Sorensen KP, Andersen H, Sullivan J, Powis Z, Chassevent A, Smith-Hicks C, Petrovski S, Antoniadi T, Shashi V, Gelb BD, Wilson SW, Gerrelli D, Tartaglia M, Chassaing N, Calvas P, Ragge NK
  Title
De Novo Missense Variants in FBXW11 Cause Diverse Developmental Phenotypes Including Brain, Eye, and Digit Anomalies.
  Journal
Am J Hum Genet 105:640-657 (2019)
DOI:10.1016/j.ajhg.2019.07.005
Reference
PMID:32430360 (BURHAS)
  Authors
Buratti J, Ji L, Keren B, Lee Y, Booke S, Erdin S, Kim SY, Palculict TB, Meiner V, Chae JH, Woods CG, Tam A, Heron D, Cong F, Harel T
  Title
De novo variants in SIAH1, encoding an E3 ubiquitin ligase, are associated with developmental delay, hypotonia and dysmorphic features.
  Journal
J Med Genet 58:205-212 (2021)
DOI:10.1136/jmedgenet-2019-106335
Reference
PMID:36608681 (NEDFIH)
  Authors
Muffels IJJ, Schene IF, Rehmann H, Massink MPG, van der Wal MM, Bauder C, Labeur M, Armando NG, Lequin MH, Houben ML, Giltay JC, Haitjema S, Huisman A, Vansenne F, Bluvstein J, Pappas J, Shailee LV, Zarate YA, Mokry M, van Haaften GW, Nieuwenhuis EES, Refojo D, van Wijk F, Fuchs SA, van Hasselt PM
  Title
Bi-allelic variants in NAE1 cause intellectual disability, ischiopubic hypoplasia, stress-mediated lymphopenia and neurodegeneration.
  Journal
Am J Hum Genet 110:146-160 (2023)
DOI:10.1016/j.ajhg.2022.12.003
Reference
PMID:33131077 (MCAND)
  Authors
Tripolszki K, Sasaki E, Hotakainen R, Kassim AH, Pereira C, Rolfs A, Bauer P, Reardon W, Bertoli-Avella AM
  Title
An X-linked syndrome with severe neurodevelopmental delay, hydrocephalus, and early lethality caused by a missense variation in the OTUD5 gene.
  Journal
Clin Genet 99:303-308 (2021)
DOI:10.1111/cge.13873
Reference
PMID:31997314 (NEDHS)
  Authors
Garret P, Ebstein F, Delplancq G, Dozieres-Puyravel B, Boughalem A, Auvin S, Duffourd Y, Klafack S, Zieba BA, Mahmoudi S, Singh KK, Duplomb L, Thauvin-Robinet C, Costa JM, Kruger E, Trost D, Verloes A, Faivre L, Vitobello A
  Title
Report of the first patient with a homozygous OTUD7A variant responsible for epileptic encephalopathy and related proteasome dysfunction.
  Journal
Clin Genet 97:567-575 (2020)
DOI:10.1111/cge.13709
Reference
PMID:32129449 (NEDMHAL)
  Authors
Ansar M, Ebstein F, Ozkoc H, Paracha SA, Iwaszkiewicz J, Gesemann M, Zoete V, Ranza E, Santoni FA, Sarwar MT, Ahmed J, Kruger E, Bachmann-Gagescu R, Antonarakis SE
  Title
Biallelic variants in PSMB1 encoding the proteasome subunit beta6 cause impairment of proteasome function, microcephaly, intellectual disability, developmental  delay and short stature.
  Journal
Hum Mol Genet 29:1132-1143 (2020)
DOI:10.1093/hmg/ddaa032
Reference
PMID:28132691 (STISS)
  Authors
Kury S, Besnard T, Ebstein F, Khan TN, Gambin T, Douglas J, Bacino CA, Craigen WJ, Sanders SJ, Lehmann A, Latypova X, Khan K, Pacault M, Sacharow S, Glaser K, Bieth E, Perrin-Sabourin L, Jacquemont ML, Cho MT, Roeder E, Denomme-Pichon AS, Monaghan KG, Yuan B, Xia F, Simon S, Bonneau D, Parent P, Gilbert-Dussardier B, Odent S, Toutain A, Pasquier L, Barbouth D, Shaw CA, Patel A, Smith JL, Bi W, Schmitt S, Deb W, Nizon M, Mercier S, Vincent M, Rooryck C, Malan V, Briceno I, Gomez A, Nugent KM, Gibson JB, Cogne B, Lupski JR, Stessman HAF, Eichler EE, Retterer K, Yang Y, Redon R, Katsanis N, Rosenfeld JA, Kloetzel PM, Golzio C, Bezieau S, Stankiewicz P, Isidor B
  Title
De Novo Disruption of the Proteasome Regulatory Subunit PSMD12 Causes a Syndromic Neurodevelopmental Disorder.
  Journal
Am J Hum Genet 100:352-363 (2017)
DOI:10.1016/j.ajhg.2017.01.003
Reference
PMID:35861243 (BKAH)
  Authors
Aharoni S, Proskorovski-Ohayon R, Krishnan RK, Yogev Y, Wormser O, Hadar N, Bakhrat A, Alshafee I, Gombosh M, Agam N, Gradstein L, Shorer Z, Zarivach R, Eskin-Schwartz M, Abdu U, Birk OS
  Title
PSMC1 variant causes a novel neurological syndrome.
  Journal
Clin Genet 102:324-332 (2022)
DOI:10.1111/cge.14195
Reference
PMID:29961569 (CAFDADD)
  Authors
Tokita MJ, Chen CA, Chitayat D, Macnamara E, Rosenfeld JA, Hanchard N, Lewis AM, Brown CW, Marom R, Shao Y, Novacic D, Wolfe L, Wahl C, Tifft CJ, Toro C, Bernstein JA, Hale CL, Silver J, Hudgins L, Ananth A, Hanson-Kahn A, Shuster S, Magoulas PL, Patel VN, Zhu W, Chen SM, Jiang Y, Liu P, Eng CM, Batkovskyte D, di Ronza A, Sardiello M, Lee BH, Schaaf CP, Yang Y, Wang X
  Title
De Novo Missense Variants in TRAF7 Cause Developmental Delay, Congenital Anomalies, and Dysmorphic Features.
  Journal
Am J Hum Genet 103:154-162 (2018)
DOI:10.1016/j.ajhg.2018.06.005
Reference
PMID:38465576 (NEDBES)
  Authors
Lecoquierre F, Punt AM, Ebstein F, Wallaard I, Verhagen R, Studencka-Turski M, Duffourd Y, Moutton S, Tran Mau-Them F, Philippe C, Dean J, Tennant S, Brooks AS, van Slegtenhorst MA, Jurgens JA, Barry BJ, Chan WM, England EM, Martinez Ojeda M, Engle EC, Robson CD, Morrow M, Innes AM, Lamont R, Sanderson M, Kruger E, Thauvin C, Distel B, Faivre L, Elgersma Y, Vitobello A
  Title
A recurrent missense variant in the E3 ubiquitin ligase substrate recognition subunit FEM1B causes a rare syndromic neurodevelopmental disorder.
  Journal
Genet Med 26:101119 (2024)
DOI:10.1016/j.gim.2024.101119
Reference
PMID:40215970 (TYMAS)
  Authors
Ramakrishna NB, Mohamad Sahari UB, Johmura Y, Ali NA, Alghamdi M, Bauer P, Khan S, Ordonez N, Ferreira M, Pinto Basto J, Alkuraya FS, Faqeih EA, Mori M, Almontashiri NAM, Al Shamsi A, ElGhazali G, Abu Subieh H, Al Ojaimi M, El-Hattab AW, Said Al-Kindi SA, Alhashmi N, Alhabshan F, Al Saman A, Tfayli H, Arabi M, Khalifeh S, Taylor A, Alfadhel M, Jain R, Sinha S, Shenbagam S, Ramachandran R, Altunoglu U, Jacob A, Thalange N, El Bejjani M, Perrin A, Shin JW, Al-Maawali A, Al-Shidhani A, Al-Futaisi A, Rabea F, Chekroun I, Almarri MA, Ohta T, Nakanishi M, Alsheikh-Ali A, Ali FR, Bertoli-Avella AM, Reversade B, Abou Tayoun A
  Title
FBXO22 deficiency defines a pleiotropic syndrome of growth restriction and multi-system anomalies associated with a unique epigenetic signature.
  Journal
Am J Hum Genet 112:1233-1246 (2025)
DOI:10.1016/j.ajhg.2025.03.013
Reference
PMID:39721588 (NEDSBH)
  Authors
Sabeh P, Dumas SA, Maios C, Daghar H, Korzeniowski M, Rousseau J, Lines M, Guerin A, Millichap JJ, Landsverk M, Grebe T, Lindstrom K, Strober J, Ait Mouhoub T, Zweier C, Steinraths M, Hebebrand M, Callewaert B, Abou Jamra R, Kautza-Lucht M, Wegler M, Kruszka P, Kumps C, Banne E, Waberski MB, Dieux A, Raible S, Krantz I, Medne L, Pechter K, Villard L, Guerrini R, Bianchini C, Barba C, Mei D, Blanc X, Kallay C, Ranza E, Yang XR, O'Heir E, Donald KA, Murugasen S, Bruwer Z, Calikoglu M, Mathews JM, Lesieur-Sebellin M, Baujat G, Derive N, Pierson TM, Murrell JR, Shillington A, Ormieres C, Rondeau S, Reis A, Fernandez-Jaen A, Au PYB, Sweetser DA, Briere LC, Couque N, Perrin L, Schymick J, Gueguen P, Lefebvre M, Van Andel M, Juusola J, Antonarakis SE, Parker JA, Burnett BG, Campeau PM
  Title
Heterozygous UBR5 variants result in a neurodevelopmental syndrome with developmental delay, autism, and intellectual disability.
  Journal
Am J Hum Genet 112:75-86 (2025)
DOI:10.1016/j.ajhg.2024.11.009
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