KEGG   PATHWAY: aamp03030
Entry
aamp03030                   Pathway                                
Name
DNA replication - Arvicola amphibius (Eurasian water vole)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
aamp03030  DNA replication
aamp03030

Organism
Arvicola amphibius (Eurasian water vole) [GN:aamp]
Gene
119800067  Rnaseh2b; ribonuclease H2 subunit B isoform X1 [KO:K10744]
119801881  Rnaseh2a; ribonuclease H2 subunit A isoform X1 [KO:K10743] [EC:3.1.26.4]
119802020  Mcm5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
119802930  Pold1; LOW QUALITY PROTEIN: DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
119803054  Pold3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
119803427  Fen1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
119803455  Prim1; DNA primase small subunit isoform X1 [KO:K02684] [EC:2.7.7.102]
119805260  Pola1; DNA polymerase alpha catalytic subunit isoform X1 [KO:K02320] [EC:2.7.7.7]
119805961  Rfc1; replication factor C subunit 1 isoform X1 [KO:K10754]
119806890  Mcm2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
119806892  Pole4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
119806968  Ssbp1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
119807764  [KO:K02210] [EC:5.6.2.3]
119808199  Rnaseh1; ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
119808389  Rpa3; replication protein A 14 kDa subunit [KO:K10740]
119812664  Rpa1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
119814560  Pcna; proliferating cell nuclear antigen [KO:K04802]
119816229  Pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
119816878  Rpa2; replication protein A 32 kDa subunit isoform X1 [KO:K10739]
119818614  Pole2; DNA polymerase epsilon subunit 2 [KO:K02325] [EC:2.7.7.7]
119820518  Lig1; DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
119821098  Pola2; DNA polymerase alpha subunit B [KO:K02321]
119821483  [KO:K10740]
119822906  Mcm3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
119823217  Dna2; DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
119823225  Prim2; DNA primase large subunit [KO:K02685]
119824631  Mcm7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
119824706  Rfc5; replication factor C subunit 5 [KO:K10756]
119824897  Rfc3; replication factor C subunit 3 [KO:K10756]
119825039  Rfc2; replication factor C subunit 2 [KO:K10755]
119825090  Mcm4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
119825104  Pold4; DNA polymerase delta subunit 4 [KO:K03505]
119825129  Rfc4; replication factor C subunit 4 [KO:K10755]
119825299  [KO:K10756]
119825349  Pole; DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
119826870  Rnaseh2c; ribonuclease H2 subunit C isoform X1 [KO:K10745]
119827353  Pold2; DNA polymerase delta subunit 2 [KO:K02328]
119827524  Mcm6; DNA replication licensing factor MCM6 isoform X1 [KO:K02542] [EC:5.6.2.3]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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