KEGG   PATHWAY: acap00020
Entry
acap00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Actinomyces capricornis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
acap00020  Citrate cycle (TCA cycle)
acap00020

Module
acap_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:acap00020]
acap_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:acap00020]
acap_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:acap00020]
acap_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:acap00020]
Other DBs
GO: 0006099
Organism
Actinomyces capricornis [GN:acap]
Gene
MANAM107_06330  citrate synthase [KO:K01647] [EC:2.3.3.1]
MANAM107_22440  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MANAM107_04270  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
MANAM107_04180  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
MANAM107_24650  pdhD; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MANAM107_03540  succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MANAM107_03550  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MANAM107_06270  sdhA_1; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MANAM107_17140  sdhA_2; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MANAM107_06280  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MANAM107_17150  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
MANAM107_06260  succinate dehydrogenase Cd [KO:K00241]
MANAM107_17130  succinate dehydrogenase [KO:K00241]
MANAM107_18790  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MANAM107_03440  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MANAM107_14620  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
MANAM107_25890  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MANAM107_24640  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
acap00010  Glycolysis / Gluconeogenesis
acap00053  Ascorbate and aldarate metabolism
acap00061  Fatty acid biosynthesis
acap00190  Oxidative phosphorylation
acap00220  Arginine biosynthesis
acap00250  Alanine, aspartate and glutamate metabolism
acap00280  Valine, leucine and isoleucine degradation
acap00350  Tyrosine metabolism
acap00470  D-Amino acid metabolism
acap00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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