KEGG   PATHWAY: acs00020
Entry
acs00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Anolis carolinensis (green anole)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
acs00020  Citrate cycle (TCA cycle)
acs00020

Module
acs_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:acs00020]
acs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:acs00020]
acs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:acs00020]
Other DBs
GO: 0006099
Organism
Anolis carolinensis (green anole) [GN:acs]
Gene
100551545  sdha; succinate dehydrogenase complex flavoprotein subunit A [KO:K00234] [EC:1.3.5.1]
100551741  fh; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
100552364  dlat; dihydrolipoamide S-acetyltransferase [KO:K00627] [EC:2.3.1.12]
100553287  dlst; dihydrolipoamide S-succinyltransferase [KO:K00658] [EC:2.3.1.61]
100553622  mdh1; malate dehydrogenase 1 [KO:K00025] [EC:1.1.1.37]
100553923  pck1; phosphoenolpyruvate carboxykinase 1 [KO:K01596] [EC:4.1.1.32]
100554324  [KO:K01900] [EC:6.2.1.4 6.2.1.5]
100554522  [KO:K01900] [EC:6.2.1.4 6.2.1.5]
100554697  ogdh; oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
100555196  suclg2; succinate-CoA ligase GDP-forming beta subunit [KO:K01900] [EC:6.2.1.4 6.2.1.5]
100555878  aco1; aconitase 1 [KO:K01681] [EC:4.2.1.3]
100556301  cs; citrate synthase [KO:K01647] [EC:2.3.3.1]
100556555  sdhb; succinate dehydrogenase complex iron sulfur subunit B [KO:K00235] [EC:1.3.5.1]
100557006  pc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
100557175  acly; ATP citrate lyase [KO:K01648] [EC:2.3.3.8]
100557794  pck2; phosphoenolpyruvate carboxykinase 2, mitochondrial [KO:K01596] [EC:4.1.1.32]
100558969  idh3b; isocitrate dehydrogenase 3 (NAD(+)) beta [KO:K00030] [EC:1.1.1.41]
100559079  ogdhl; oxoglutarate dehydrogenase-like [KO:K00164] [EC:1.2.4.2]
100559792  suclg1; succinate-CoA ligase alpha subunit [KO:K01899] [EC:6.2.1.4 6.2.1.5]
100559917  pdhb; pyruvate dehydrogenase (lipoamide) beta [KO:K00162] [EC:1.2.4.1]
100561742  sucla2; succinate-CoA ligase ADP-forming beta subunit [KO:K01900] [EC:6.2.1.4 6.2.1.5]
100561889  dld; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
100562191  sdhc; succinate dehydrogenase complex subunit C [KO:K00236]
100563761  mdh2; malate dehydrogenase 2 [KO:K00026] [EC:1.1.1.37]
100564823  idh2; isocitrate dehydrogenase (NADP(+)) 2, mitochondrial [KO:K00031] [EC:1.1.1.42]
100566326  idh3a; isocitrate dehydrogenase 3 (NAD(+)) alpha [KO:K00030] [EC:1.1.1.41]
100566676  idh1; isocitrate dehydrogenase (NADP(+)) 1, cytosolic [KO:K00031] [EC:1.1.1.42]
100567899  idh3g; isocitrate dehydrogenase 3 (NAD(+)) gamma [KO:K00030] [EC:1.1.1.41]
100567971  pdha1; pyruvate dehydrogenase (lipoamide) alpha 1 [KO:K00161] [EC:1.2.4.1]
100568244  aco2; aconitase 2 [KO:K01681] [EC:4.2.1.3]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
acs00010  Glycolysis / Gluconeogenesis
acs00053  Ascorbate and aldarate metabolism
acs00061  Fatty acid biosynthesis
acs00062  Fatty acid elongation
acs00071  Fatty acid degradation
acs00190  Oxidative phosphorylation
acs00220  Arginine biosynthesis
acs00250  Alanine, aspartate and glutamate metabolism
acs00280  Valine, leucine and isoleucine degradation
acs00350  Tyrosine metabolism
acs00470  D-Amino acid metabolism
acs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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