KEGG   PATHWAY: acyc00020
Entry
acyc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Alicyclobacillus cycloheptanicus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
acyc00020  Citrate cycle (TCA cycle)
acyc00020

Module
acyc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:acyc00020]
acyc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:acyc00020]
acyc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:acyc00020]
acyc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:acyc00020]
acyc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:acyc00020]
Other DBs
GO: 0006099
Organism
Alicyclobacillus cycloheptanicus [GN:acyc]
Gene
JI721_07190  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
JI721_11825  citrate synthase [KO:K01647] [EC:2.3.3.1]
JI721_09755  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
JI721_16970  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
JI721_03260  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
JI721_08725  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
JI721_01265  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
JI721_01260  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
JI721_08755  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JI721_15845  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JI721_01990  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
JI721_02005  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
JI721_10375  2-oxoacid:acceptor oxidoreductase family protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
JI721_01985  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
JI721_02010  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
JI721_10385  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
JI721_00480  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
JI721_00485  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
JI721_12305  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
JI721_14990  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
JI721_14995  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
JI721_14985  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
JI721_09255  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
JI721_01580  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
JI721_01575  fumarate hydratase C-terminal domain-containing protein [KO:K01678] [EC:4.2.1.2]
JI721_03255  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JI721_10845  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
JI721_10850  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
JI721_13275  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
JI721_03525  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
JI721_08770  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
JI721_03520  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
JI721_08765  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
JI721_03515  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
JI721_04670  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
JI721_08760  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
acyc00010  Glycolysis / Gluconeogenesis
acyc00053  Ascorbate and aldarate metabolism
acyc00061  Fatty acid biosynthesis
acyc00071  Fatty acid degradation
acyc00190  Oxidative phosphorylation
acyc00220  Arginine biosynthesis
acyc00250  Alanine, aspartate and glutamate metabolism
acyc00280  Valine, leucine and isoleucine degradation
acyc00350  Tyrosine metabolism
acyc00470  D-Amino acid metabolism
acyc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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