KEGG   PATHWAY: aec00020
Entry
aec00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Acromyrmex echinatior (Panamanian leafcutter ant)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aec00020  Citrate cycle (TCA cycle)
aec00020

Module
aec_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aec00020]
aec_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aec00020]
aec_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aec00020]
aec_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aec00020]
aec_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aec00020]
Other DBs
GO: 0006099
Organism
Acromyrmex echinatior (Panamanian leafcutter ant) [GN:aec]
Gene
105147773  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
105154492  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
105143187  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
105148173  LOW QUALITY PROTEIN: cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
105152096  probable aconitate hydratase, mitochondrial isoform X1 [KO:K01681] [EC:4.2.1.3]
105154247  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
105146122  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
105147483  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
105150366  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
105147319  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
105153478  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
105144144  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
105146605  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
105146393  succinyl-CoA ligase subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
105147513  succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
105148977  LOW QUALITY PROTEIN: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
105148979  succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
105151224  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
105151236  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
105149467  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
105151041  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like isoform X1 [KO:K00235] [EC:1.3.5.1]
105150305  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
105150009  putative succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
105153257  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
105146275  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
105147593  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
105152818  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
105148929  LOW QUALITY PROTEIN: pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
105149957  phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
105144383  pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
105150586  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
105146904  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like isoform X1 [KO:K00162] [EC:1.2.4.1]
105152572  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
105146642  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
105148134  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aec00010  Glycolysis / Gluconeogenesis
aec00053  Ascorbate and aldarate metabolism
aec00061  Fatty acid biosynthesis
aec00062  Fatty acid elongation
aec00071  Fatty acid degradation
aec00190  Oxidative phosphorylation
aec00220  Arginine biosynthesis
aec00250  Alanine, aspartate and glutamate metabolism
aec00280  Valine, leucine and isoleucine degradation
aec00350  Tyrosine metabolism
aec00470  D-Amino acid metabolism
aec00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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