KEGG   PATHWAY: afx00020
Entry
afx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Alicyclobacillus mengziensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
afx00020  Citrate cycle (TCA cycle)
afx00020

Module
afx_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:afx00020]
afx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:afx00020]
afx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:afx00020]
afx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:afx00020]
afx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:afx00020]
Other DBs
GO: 0006099
Organism
Alicyclobacillus mengziensis [GN:afx]
Gene
JZ786_17590  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
JZ786_18090  citrate synthase [KO:K01647] [EC:2.3.3.1]
JZ786_08715  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
JZ786_19715  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
JZ786_20360  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
JZ786_04245  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
JZ786_14520  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
JZ786_14515  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
JZ786_04270  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JZ786_14755  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JZ786_01890  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
JZ786_04710  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
JZ786_09725  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
JZ786_01895  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
JZ786_04715  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
JZ786_09720  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
JZ786_01900  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
JZ786_01885  ferredoxin family protein [KO:K00176] [EC:1.2.7.3]
JZ786_12055  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
JZ786_12050  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
JZ786_03435  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
JZ786_04720  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
JZ786_15575  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
JZ786_15570  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
JZ786_19705  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
JZ786_19770  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
JZ786_15580  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
JZ786_08465  fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
JZ786_24215  fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
JZ786_08470  fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
JZ786_24210  fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
JZ786_24220  hypothetical protein [KO:K25996]
JZ786_08460  hypothetical protein [KO:K25996]
JZ786_06235  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
JZ786_09320  aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
JZ786_20355  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JZ786_22040  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
JZ786_23250  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
JZ786_22710  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
JZ786_04285  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
JZ786_20645  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
JZ786_22705  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
JZ786_04280  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
JZ786_20640  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
JZ786_22700  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
JZ786_04275  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
JZ786_20635  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
JZ786_22255  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
JZ786_11145  pyruvate synthase [KO:K00169] [EC:1.2.7.1]
JZ786_11140  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
afx00010  Glycolysis / Gluconeogenesis
afx00053  Ascorbate and aldarate metabolism
afx00061  Fatty acid biosynthesis
afx00071  Fatty acid degradation
afx00190  Oxidative phosphorylation
afx00220  Arginine biosynthesis
afx00250  Alanine, aspartate and glutamate metabolism
afx00280  Valine, leucine and isoleucine degradation
afx00350  Tyrosine metabolism
afx00470  D-Amino acid metabolism
afx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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