KEGG   PATHWAY: amam00020
Entry
amam00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Actinomyces marmotae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
amam00020  Citrate cycle (TCA cycle)
amam00020

Module
amam_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:amam00020]
amam_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:amam00020]
Other DBs
GO: 0006099
Organism
Actinomyces marmotae [GN:amam]
Gene
HPC72_08495  citrate synthase [KO:K01647] [EC:2.3.3.1]
HPC72_04690  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HPC72_07985  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HPC72_07940  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
HPC72_05745  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HPC72_07685  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HPC72_02590  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HPC72_02595  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HPC72_02585  succinate dehydrogenase cytochrome b subunit [KO:K00241]
HPC72_03590  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HPC72_03250  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HPC72_01225  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
HPC72_05885  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HPC72_05750  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
amam00010  Glycolysis / Gluconeogenesis
amam00053  Ascorbate and aldarate metabolism
amam00061  Fatty acid biosynthesis
amam00190  Oxidative phosphorylation
amam00220  Arginine biosynthesis
amam00250  Alanine, aspartate and glutamate metabolism
amam00280  Valine, leucine and isoleucine degradation
amam00350  Tyrosine metabolism
amam00470  D-Amino acid metabolism
amam00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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