KEGG   PATHWAY: anh00020
Entry
anh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Paraurantiacibacter namhicola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
anh00020  Citrate cycle (TCA cycle)
anh00020

Module
anh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:anh00020]
anh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:anh00020]
anh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:anh00020]
anh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:anh00020]
anh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:anh00020]
Other DBs
GO: 0006099
Organism
Paraurantiacibacter namhicola [GN:anh]
Gene
A6F65_01782  gltA_2; Citrate synthase [KO:K01647] [EC:2.3.3.1]
A6F65_02536  acnA; Aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
A6F65_01399  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
A6F65_01346  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
A6F65_01345  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
A6F65_01343  lpd3; Dihydrolipoyl dehydrogenase 3 [KO:K00382] [EC:1.8.1.4]
A6F65_01676  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A6F65_01524  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
A6F65_01525  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
A6F65_01347  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
A6F65_00353  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
A6F65_01510  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A6F65_01832  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A6F65_01508  succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
A6F65_01509  succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
A6F65_00450  fumB; Fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
A6F65_01349  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A6F65_01174  pckA; Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
A6F65_01750  acoA; Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [KO:K00161] [EC:1.2.4.1]
A6F65_01749  bfmBAB; 2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
A6F65_01679  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
anh00010  Glycolysis / Gluconeogenesis
anh00053  Ascorbate and aldarate metabolism
anh00061  Fatty acid biosynthesis
anh00071  Fatty acid degradation
anh00190  Oxidative phosphorylation
anh00220  Arginine biosynthesis
anh00250  Alanine, aspartate and glutamate metabolism
anh00280  Valine, leucine and isoleucine degradation
anh00350  Tyrosine metabolism
anh00470  D-Amino acid metabolism
anh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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