KEGG   PATHWAY: apib00020
Entry
apib00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Apibacter sp. B2966
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
apib00020  Citrate cycle (TCA cycle)
apib00020

Module
apib_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:apib00020]
apib_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:apib00020]
apib_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:apib00020]
apib_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:apib00020]
apib_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:apib00020]
Other DBs
GO: 0006099
Organism
Apibacter sp. B2966 [GN:apib]
Gene
G8C43_03830  citrate synthase [KO:K01647] [EC:2.3.3.1]
G8C43_07255  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
G8C43_09560  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
G8C43_02640  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
G8C43_01060  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
G8C43_02635  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
G8C43_01815  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
G8C43_04190  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
G8C43_02510  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
G8C43_05995  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
G8C43_02345  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
G8C43_02340  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
G8C43_02350  succinate dehydrogenase cytochrome b subunit [KO:K00241]
G8C43_06945  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
G8C43_09875  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
G8C43_05145  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
G8C43_03545  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
G8C43_04935  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
G8C43_04465  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
G8C43_04940  biotin/lipoyl-binding protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
apib00010  Glycolysis / Gluconeogenesis
apib00053  Ascorbate and aldarate metabolism
apib00061  Fatty acid biosynthesis
apib00071  Fatty acid degradation
apib00190  Oxidative phosphorylation
apib00220  Arginine biosynthesis
apib00250  Alanine, aspartate and glutamate metabolism
apib00280  Valine, leucine and isoleucine degradation
apib00350  Tyrosine metabolism
apib00470  D-Amino acid metabolism
apib00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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