KEGG   PATHWAY: apro00020
Entry
apro00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Auxenochlorella protothecoides
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
apro00020  Citrate cycle (TCA cycle)
apro00020

Module
apro_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:apro00020]
apro_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:apro00020]
apro_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:apro00020]
apro_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:apro00020]
apro_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:apro00020]
Other DBs
GO: 0006099
Organism
Auxenochlorella protothecoides [GN:apro]
Gene
F751_4422  putative citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
F751_0619  Citrate synthase 2, peroxisomal [KO:K01647] [EC:2.3.3.1]
F751_3241  putative ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
F751_4870  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
F751_6354  Aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
F751_4598  Isocitrate dehydrogenase [NADP], chloroplastic [KO:K00031] [EC:1.1.1.42]
F751_3437  Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial [KO:K00030] [EC:1.1.1.41]
F751_5431  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
F751_1292  Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [KO:K00658] [EC:2.3.1.61]
F751_3854  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
F751_2610  Dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
F751_2535  Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
F751_0297  Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
F751_1347  Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
F751_4319  Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
F751_4320  Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
F751_6400  Succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
F751_3513  Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
F751_6852  Fumarate hydratase 2, chloroplastic [KO:K01679] [EC:4.2.1.2]
F751_0245  Malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
F751_1044  Malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
F751_2417  Malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
F751_6612  Malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
F751_0641  Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
F751_3693  Phosphoenolpyruvate carboxykinase [ATP] 1 [KO:K01610] [EC:4.1.1.49]
F751_5868  Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
F751_4985  Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
F751_3851  Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
F751_1964  Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
F751_3504  Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
F751_1664  Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
F751_0647  Pyruvate dehydrogenase protein X component, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
apro00010  Glycolysis / Gluconeogenesis
apro00053  Ascorbate and aldarate metabolism
apro00061  Fatty acid biosynthesis
apro00062  Fatty acid elongation
apro00071  Fatty acid degradation
apro00190  Oxidative phosphorylation
apro00220  Arginine biosynthesis
apro00250  Alanine, aspartate and glutamate metabolism
apro00280  Valine, leucine and isoleucine degradation
apro00350  Tyrosine metabolism
apro00470  D-Amino acid metabolism
apro00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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