KEGG   PATHWAY: babs00020
Entry
babs00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Brucella abortus BER
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
babs00020  Citrate cycle (TCA cycle)
babs00020

Module
babs_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:babs00020]
babs_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:babs00020]
babs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:babs00020]
babs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:babs00020]
babs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:babs00020]
Other DBs
GO: 0006099
Organism
Brucella abortus BER [GN:babs]
Gene
DK51_1357  acnA; aconitate hydratase 1 [KO:K27802]
DK51_1532  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
DK51_1689  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
DK51_1690  sucC; succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
DK51_1691  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
DK51_1692  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
DK51_1693  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
DK51_1697  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DK51_1711  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DK51_1712  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
DK51_1713  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DK51_1714  [KO:K00240] [EC:1.3.5.1]
DK51_1825  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
DK51_2164  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DK51_2439  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
DK51_2580  [KO:K00627] [EC:2.3.1.12]
DK51_276  [KO:K00031] [EC:1.1.1.42]
DK51_322  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DK51_339  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
DK51_340  [KO:K00162] [EC:1.2.4.1]
DK51_341  [KO:K00627] [EC:2.3.1.12]
DK51_342  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DK51_413  [KO:K18118] [EC:2.8.3.18]
DK51_510  [KO:K01676] [EC:4.2.1.2]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
babs00010  Glycolysis / Gluconeogenesis
babs00053  Ascorbate and aldarate metabolism
babs00061  Fatty acid biosynthesis
babs00071  Fatty acid degradation
babs00190  Oxidative phosphorylation
babs00220  Arginine biosynthesis
babs00250  Alanine, aspartate and glutamate metabolism
babs00280  Valine, leucine and isoleucine degradation
babs00350  Tyrosine metabolism
babs00470  D-Amino acid metabolism
babs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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