KEGG   PATHWAY: bacp00020
Entry
bacp00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus sp. Pc3
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bacp00020  Citrate cycle (TCA cycle)
bacp00020

Module
bacp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bacp00020]
bacp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bacp00020]
bacp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bacp00020]
bacp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bacp00020]
bacp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bacp00020]
Other DBs
GO: 0006099
Organism
Bacillus sp. Pc3 [GN:bacp]
Gene
SB24_05030  citrate synthase [KO:K01647] [EC:2.3.3.1]
SB24_15580  citrate synthase [KO:K01647] [EC:2.3.3.1]
SB24_17515  citrate synthase 3 [KO:K01647] [EC:2.3.3.1]
SB24_00785  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SB24_15585  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SB24_19130  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
SB24_19135  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
SB24_05750  acoL; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SB24_02465  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SB24_17555  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SB24_01740  succinyl-CoA synthetase subsunit alpha [KO:K01902] [EC:6.2.1.5]
SB24_01745  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
SB24_15915  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
SB24_15920  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
SB24_15910  succinate dehydrogenase [KO:K00241]
SB24_13660  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
SB24_15590  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
SB24_02340  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
SB24_14945  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
SB24_02480  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
SB24_02475  2-oxoisovalerate dehydrogenase [KO:K00162] [EC:1.2.4.1]
SB24_05755  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
SB24_02470  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bacp00010  Glycolysis / Gluconeogenesis
bacp00053  Ascorbate and aldarate metabolism
bacp00061  Fatty acid biosynthesis
bacp00071  Fatty acid degradation
bacp00190  Oxidative phosphorylation
bacp00220  Arginine biosynthesis
bacp00250  Alanine, aspartate and glutamate metabolism
bacp00280  Valine, leucine and isoleucine degradation
bacp00350  Tyrosine metabolism
bacp00470  D-Amino acid metabolism
bacp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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