KEGG   PATHWAY: bacu00020
Entry
bacu00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Balaenoptera acutorostrata scammoni (minke whale)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bacu00020  Citrate cycle (TCA cycle)
bacu00020

Module
bacu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bacu00020]
bacu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bacu00020]
bacu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bacu00020]
bacu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bacu00020]
bacu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bacu00020]
Other DBs
GO: 0006099
Organism
Balaenoptera acutorostrata scammoni (minke whale) [GN:bacu]
Gene
102998810  CS; citrate synthase [KO:K01647] [EC:2.3.3.1]
103003294  ATP-citrate synthase-like [KO:K01648] [EC:2.3.3.8]
103009790  ATP-citrate synthase-like [KO:K01648] [EC:2.3.3.8]
103001245  ACO2; aconitase 2 [KO:K01681] [EC:4.2.1.3]
103020313  ACO1; aconitase 1 [KO:K01681] [EC:4.2.1.3]
103019163  IDH1; isocitrate dehydrogenase (NADP(+)) 1, cytosolic [KO:K00031] [EC:1.1.1.42]
103003463  IDH2; isocitrate dehydrogenase (NADP(+)) 2, mitochondrial [KO:K00031] [EC:1.1.1.42]
102998515  IDH3B; isocitrate dehydrogenase 3 (NAD(+)) beta [KO:K00030] [EC:1.1.1.41]
103018652  IDH3A; isocitrate dehydrogenase 3 (NAD(+)) alpha [KO:K00030] [EC:1.1.1.41]
103016817  IDH3G; isocitrate dehydrogenase 3 (NAD(+)) gamma [KO:K00030] [EC:1.1.1.41]
103003053  OGDH; oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
103016698  OGDHL; oxoglutarate dehydrogenase-like [KO:K00164] [EC:1.2.4.2]
103017006  DLST; dihydrolipoamide S-succinyltransferase [KO:K00658] [EC:2.3.1.61]
103021007  DLD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
103011615  SUCLG1; succinate-CoA ligase alpha subunit [KO:K01899] [EC:6.2.1.4 6.2.1.5]
103012428  SUCLA2; succinate-CoA ligase ADP-forming beta subunit [KO:K01900] [EC:6.2.1.4 6.2.1.5]
103017791  SUCLG2; succinate-CoA ligase GDP-forming beta subunit [KO:K01900] [EC:6.2.1.4 6.2.1.5]
103005047  SDHA; succinate dehydrogenase complex flavoprotein subunit A [KO:K00234] [EC:1.3.5.1]
103013798  SDHB; succinate dehydrogenase complex iron sulfur subunit B [KO:K00235] [EC:1.3.5.1]
103010344  SDHC; succinate dehydrogenase complex subunit C [KO:K00236]
103014249  SDHD; succinate dehydrogenase complex subunit D [KO:K00237]
103017742  FH; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
103016557  MDH1; malate dehydrogenase 1 [KO:K00025] [EC:1.1.1.37]
103008368  MDH2; malate dehydrogenase 2 [KO:K00026] [EC:1.1.1.37]
103015813  PC; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
103019398  PCK2; phosphoenolpyruvate carboxykinase 2, mitochondrial [KO:K01596] [EC:4.1.1.32]
103008859  PCK1; phosphoenolpyruvate carboxykinase 1 [KO:K01596] [EC:4.1.1.32]
103016773  PDHA1; pyruvate dehydrogenase (lipoamide) alpha 1 [KO:K00161] [EC:1.2.4.1]
103021119  PDHB; pyruvate dehydrogenase (lipoamide) beta [KO:K00162] [EC:1.2.4.1]
103015825  DLAT; dihydrolipoamide S-acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bacu00010  Glycolysis / Gluconeogenesis
bacu00053  Ascorbate and aldarate metabolism
bacu00061  Fatty acid biosynthesis
bacu00062  Fatty acid elongation
bacu00071  Fatty acid degradation
bacu00190  Oxidative phosphorylation
bacu00220  Arginine biosynthesis
bacu00250  Alanine, aspartate and glutamate metabolism
bacu00280  Valine, leucine and isoleucine degradation
bacu00350  Tyrosine metabolism
bacu00470  D-Amino acid metabolism
bacu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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