KEGG   PATHWAY: bag00020
Entry
bag00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Heyndrickxia coagulans 36D1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bag00020  Citrate cycle (TCA cycle)
bag00020

Module
bag_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bag00020]
bag_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bag00020]
bag_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bag00020]
bag_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bag00020]
bag_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bag00020]
Other DBs
GO: 0006099
Organism
Heyndrickxia coagulans 36D1 [GN:bag]
Gene
Bcoa_0640  Citrate synthase [KO:K01647] [EC:2.3.3.1]
Bcoa_2520  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
Bcoa_3175  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Bcoa_2521  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Bcoa_3252  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Bcoa_3251  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Bcoa_0220  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bcoa_2874  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bcoa_3110  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bcoa_0070  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Bcoa_0071  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Bcoa_2586  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Bcoa_2587  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Bcoa_2585  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
Bcoa_0436  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Bcoa_2522  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Bcoa_1330  malate/quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Bcoa_2417  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Bcoa_0223  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Bcoa_0222  Transketolase central region [KO:K00162] [EC:1.2.4.1]
Bcoa_3111  catalytic domain-containing protein of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Bcoa_0221  catalytic domain-containing protein of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bag00010  Glycolysis / Gluconeogenesis
bag00053  Ascorbate and aldarate metabolism
bag00061  Fatty acid biosynthesis
bag00062  Fatty acid elongation
bag00071  Fatty acid degradation
bag00190  Oxidative phosphorylation
bag00220  Arginine biosynthesis
bag00250  Alanine, aspartate and glutamate metabolism
bag00280  Valine, leucine and isoleucine degradation
bag00350  Tyrosine metabolism
bag00470  D-Amino acid metabolism
bag00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system