KEGG   PATHWAY: bcoc00020
Entry
bcoc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Blautia producta DSM 935
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bcoc00020  Citrate cycle (TCA cycle)
bcoc00020

Module
bcoc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bcoc00020]
bcoc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bcoc00020]
Other DBs
GO: 0006099
Organism
Blautia producta DSM 935 [GN:bcoc]
Gene
BLCOC_07610  ttdA_1; L(+)-tartrate dehydratase subunit alpha [KO:K01677] [EC:4.2.1.2]
BLCOC_07620  fumB_1; Fumarate hydratase class I, anaerobic [KO:K01678] [EC:4.2.1.2]
BLCOC_10790  ndhI_1; NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [KO:K00172] [EC:1.2.7.1]
BLCOC_10800  [KO:K00169] [EC:1.2.7.1]
BLCOC_17230  korA_1; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BLCOC_17240  korB_1; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BLCOC_17250  porC; Pyruvate synthase subunit PorC [KO:K00177] [EC:1.2.7.3]
BLCOC_23110  ttdA_2; L(+)-tartrate dehydratase subunit alpha [KO:K01677] [EC:4.2.1.2]
BLCOC_23120  fumB_2; Fumarate hydratase class I, anaerobic [KO:K01678] [EC:4.2.1.2]
BLCOC_26450  pckA; Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BLCOC_27270  [KO:K05942] [EC:2.3.3.3]
BLCOC_27290  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
BLCOC_39330  [KO:K03737] [EC:1.2.7.1 1.2.7.-]
BLCOC_39460  pycA; Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BLCOC_39630  gltA; Citrate synthase [KO:K01659] [EC:2.3.3.5]
BLCOC_42120  [KO:K01677] [EC:4.2.1.2]
BLCOC_42130  ttdB; L(+)-tartrate dehydratase subunit beta [KO:K01678] [EC:4.2.1.2]
BLCOC_43080  [KO:K00177] [EC:1.2.7.3]
BLCOC_43090  korB_2; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BLCOC_43100  korA_2; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BLCOC_43110  rsxB_11; Ion-translocating oxidoreductase complex subunit B [KO:K00176] [EC:1.2.7.3]
BLCOC_54120  [KO:K03737] [EC:1.2.7.1 1.2.7.-]
BLCOC_54300  [KO:K00177] [EC:1.2.7.3]
BLCOC_54310  [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BLCOC_54320  padG; NADH-dependent phenylglyoxylate dehydrogenase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bcoc00010  Glycolysis / Gluconeogenesis
bcoc00053  Ascorbate and aldarate metabolism
bcoc00061  Fatty acid biosynthesis
bcoc00071  Fatty acid degradation
bcoc00190  Oxidative phosphorylation
bcoc00220  Arginine biosynthesis
bcoc00250  Alanine, aspartate and glutamate metabolism
bcoc00280  Valine, leucine and isoleucine degradation
bcoc00350  Tyrosine metabolism
bcoc00470  D-Amino acid metabolism
bcoc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

DBGET integrated database retrieval system