KEGG   PATHWAY: bcs00020
Entry
bcs00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Brucella canis ATCC 23365
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bcs00020  Citrate cycle (TCA cycle)
bcs00020

Module
bcs_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bcs00020]
bcs_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bcs00020]
bcs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bcs00020]
bcs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bcs00020]
bcs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bcs00020]
Other DBs
GO: 0006099
Organism
Brucella canis ATCC 23365 [GN:bcs]
Gene
BCAN_A0095  acnA; aconitate hydratase 1 [KO:K27802]
BCAN_A0973  [KO:K01676] [EC:4.2.1.2]
BCAN_A1073  [KO:K18118] [EC:2.8.3.18]
BCAN_A1145  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BCAN_A1146  [KO:K00627] [EC:2.3.1.12]
BCAN_A1147  [KO:K00162] [EC:1.2.4.1]
BCAN_A1148  [KO:K00161] [EC:1.2.4.1]
BCAN_A1167  gltA; citrate synthase I [KO:K01647] [EC:2.3.3.1]
BCAN_A1221  [KO:K00031] [EC:1.1.1.42]
BCAN_A1819  [KO:K01958] [EC:6.4.1.1]
BCAN_A1944  [KO:K00240] [EC:1.3.5.1]
BCAN_A1945  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BCAN_A1946  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BCAN_A1947  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BCAN_A1962  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BCAN_A1966  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BCAN_A1967  sucA; 2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
BCAN_A1969  [KO:K01902] [EC:6.2.1.5]
BCAN_A1970  [KO:K01903] [EC:6.2.1.5]
BCAN_A1971  mdh; Malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
BCAN_A2135  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BCAN_B0035  [KO:K00627] [EC:2.3.1.12]
BCAN_B0192  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BCAN_B0525  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bcs00010  Glycolysis / Gluconeogenesis
bcs00053  Ascorbate and aldarate metabolism
bcs00061  Fatty acid biosynthesis
bcs00071  Fatty acid degradation
bcs00190  Oxidative phosphorylation
bcs00220  Arginine biosynthesis
bcs00250  Alanine, aspartate and glutamate metabolism
bcs00280  Valine, leucine and isoleucine degradation
bcs00350  Tyrosine metabolism
bcs00470  D-Amino acid metabolism
bcs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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