KEGG   PATHWAY: bcv00020
Entry
bcv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Beutenbergia cavernae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bcv00020  Citrate cycle (TCA cycle)
bcv00020

Module
bcv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bcv00020]
bcv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bcv00020]
bcv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bcv00020]
bcv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bcv00020]
Other DBs
GO: 0006099
Organism
Beutenbergia cavernae [GN:bcv]
Gene
Bcav_1130  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Bcav_0881  Citrate synthase [KO:K01647] [EC:2.3.3.1]
Bcav_3747  Citrate synthase [KO:K01647] [EC:2.3.3.1]
Bcav_3748  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
Bcav_1946  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Bcav_3007  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Bcav_1274  2-oxoglutarate dehydrogenase, E1 subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
Bcav_1863  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bcav_0507  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bcav_3016  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Bcav_3017  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Bcav_3565  Succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
Bcav_2952  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Bcav_3564  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Bcav_2953  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Bcav_2950  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Bcav_2951  succinate dehydrogenase cytochrome b556 subunit [KO:K00242]
Bcav_3051  fumarate lyase [KO:K01679] [EC:4.2.1.2]
Bcav_3006  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Bcav_0816  malate/quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Bcav_3601  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Bcav_1810  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Bcav_1862  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bcv00010  Glycolysis / Gluconeogenesis
bcv00053  Ascorbate and aldarate metabolism
bcv00061  Fatty acid biosynthesis
bcv00071  Fatty acid degradation
bcv00190  Oxidative phosphorylation
bcv00220  Arginine biosynthesis
bcv00250  Alanine, aspartate and glutamate metabolism
bcv00280  Valine, leucine and isoleucine degradation
bcv00350  Tyrosine metabolism
bcv00470  D-Amino acid metabolism
bcv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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