KEGG   PATHWAY: bgz00630
Entry
bgz00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Bradyrhizobium guangzhouense
Class
Metabolism; Carbohydrate metabolism
Pathway map
bgz00630  Glyoxylate and dicarboxylate metabolism
bgz00630

Module
bgz_M00012  Glyoxylate cycle [PATH:bgz00630]
bgz_M00621  Glycine cleavage system [PATH:bgz00630]
bgz_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:bgz00630]
Other DBs
GO: 0046487 0043648
Organism
Bradyrhizobium guangzhouense [GN:bgz]
Gene
XH91_26810  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
XH91_01580  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
XH91_29420  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
XH91_20815  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
XH91_06235  malate synthase G [KO:K01638] [EC:2.3.3.9]
XH91_02315  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
XH91_03915  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
XH91_03920  citrate synthase [KO:K01647] [EC:2.3.3.1]
XH91_16735  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
XH91_02250  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
XH91_24510  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
XH91_26955  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
XH91_29645  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
XH91_31235  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
XH91_03680  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
XH91_05860  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
XH91_14840  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
XH91_10610  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
XH91_32505  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
XH91_20940  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
XH91_20865  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
XH91_03685  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
XH91_36035  ccrA; crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
XH91_16425  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
XH91_15155  acetyl/propionyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
XH91_14765  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
XH91_23890  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
XH91_23900  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
XH91_30425  FAD-binding oxidoreductase [KO:K00104] [EC:1.1.99.14]
XH91_30410  2-hydroxy-acid oxidase [KO:K11472] [EC:1.1.99.14]
XH91_30405  glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
XH91_00335  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
XH91_06735  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
XH91_08575  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
XH91_15380  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
XH91_17295  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
XH91_21760  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
XH91_34960  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
XH91_35125  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
XH91_26090  rbcL; ribulose-bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
XH91_37745  hypothetical protein [KO:K01601] [EC:4.1.1.39]
XH91_26085  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
XH91_37750  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
XH91_03240  aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
XH91_11395  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
XH91_16170  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
XH91_19950  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
XH91_33070  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
XH91_15865  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
XH91_12695  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
XH91_12705  glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
XH91_02350  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
XH91_16950  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
XH91_12700  gcvH; glycine cleavage system protein GcvH [KO:K02437]
XH91_23295  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
XH91_23290  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
XH91_23280  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
XH91_37295  glycerate kinase [KO:K11529] [EC:2.7.1.165]
XH91_05800  glycerate kinase [KO:K11529] [EC:2.7.1.165]
XH91_24610  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
XH91_37300  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
XH91_09310  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
XH91_20945  keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
XH91_23540  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
XH91_23530  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
XH91_27965  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
XH91_27970  NADH-quinone oxidoreductase subunit F [KO:K22515] [EC:1.17.1.9]
XH91_23525  formate dehydrogenase [KO:K00124]
XH91_23520  formate dehydrogenase subunit gamma [KO:K00127]
XH91_20015  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
XH91_11720  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
XH91_33545  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
XH91_23325  oxc; oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bgz00010  Glycolysis / Gluconeogenesis
bgz00020  Citrate cycle (TCA cycle)
bgz00030  Pentose phosphate pathway
bgz00053  Ascorbate and aldarate metabolism
bgz00071  Fatty acid degradation
bgz00230  Purine metabolism
bgz00250  Alanine, aspartate and glutamate metabolism
bgz00260  Glycine, serine and threonine metabolism
bgz00620  Pyruvate metabolism
bgz00710  Carbon fixation by Calvin cycle
bgz00750  Vitamin B6 metabolism
bgz00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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