KEGG   PATHWAY: bgz00030
Entry
bgz00030                    Pathway                                
Name
Pentose phosphate pathway - Bradyrhizobium guangzhouense
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bgz00030  Pentose phosphate pathway
bgz00030

Module
bgz_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:bgz00030]
bgz_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:bgz00030]
bgz_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:bgz00030]
bgz_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:bgz00030]
Other DBs
GO: 0006098
Organism
Bradyrhizobium guangzhouense [GN:bgz]
Gene
XH91_08330  transaldolase [KO:K13810] [EC:2.2.1.2 5.3.1.9]
XH91_08320  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
XH91_08315  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
XH91_37290  3-carboxymuconate cyclase [KO:K07404] [EC:3.1.1.31]
XH91_03265  lactonase family protein [KO:K07404] [EC:3.1.1.31]
XH91_08325  gnd; decarboxylating 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
XH91_26075  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
XH91_37760  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
XH91_13010  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
XH91_26100  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
XH91_37740  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
XH91_37855  transketolase [KO:K00615] [EC:2.2.1.1]
XH91_37860  transketolase family protein [KO:K00615] [EC:2.2.1.1]
XH91_06495  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
XH91_14400  transketolase [KO:K00615] [EC:2.2.1.1]
XH91_14405  transketolase [KO:K00615] [EC:2.2.1.1]
XH91_21755  ribose 5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
XH91_32695  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
XH91_26420  phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
XH91_24980  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
XH91_37780  ribokinase [KO:K00852] [EC:2.7.1.15]
XH91_34865  ribokinase [KO:K00852] [EC:2.7.1.15]
XH91_34995  ribokinase [KO:K00852] [EC:2.7.1.15]
XH91_27180  phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
XH91_04725  phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
XH91_05205  phnN; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN [KO:K05774] [EC:2.7.4.23]
XH91_23635  phosphoribosylpyrophosphate synthetase [KO:K00948] [EC:2.7.6.1]
XH91_29925  phosphoribosylpyrophosphate synthetase [KO:K00948] [EC:2.7.6.1]
XH91_20945  keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
XH91_06700  sugar dehydrogenase [KO:K00034] [EC:1.1.1.47]
XH91_08115  dehydrogenase [KO:K00034] [EC:1.1.1.47]
XH91_14165  membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family [KO:K00117] [EC:1.1.5.2]
XH91_25035  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
XH91_28340  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
XH91_38170  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
XH91_37885  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
XH91_08610  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
XH91_09940  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
XH91_09980  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
XH91_22590  gluconolactonase [KO:K01053] [EC:3.1.1.17]
XH91_08310  gluconokinase [KO:K00851] [EC:2.7.1.12]
XH91_20950  sugar kinase [KO:K00874] [EC:2.7.1.45]
XH91_37295  glycerate kinase [KO:K11529] [EC:2.7.1.165]
XH91_05800  glycerate kinase [KO:K11529] [EC:2.7.1.165]
XH91_06475  fructose-bisphosphate aldolase class I [KO:K01623] [EC:4.1.2.13]
XH91_26095  fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
XH91_06480  fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
XH91_26110  class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
XH91_37730  class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
XH91_19170  glpX; class II fructose-bisphosphatase [KO:K11532] [EC:3.1.3.11 3.1.3.37]
XH91_10045  1-phosphofructokinase family hexose kinase [KO:K16370] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
bgz00010  Glycolysis / Gluconeogenesis
bgz00040  Pentose and glucuronate interconversions
bgz00052  Galactose metabolism
bgz00230  Purine metabolism
bgz00240  Pyrimidine metabolism
bgz00340  Histidine metabolism
bgz00630  Glyoxylate and dicarboxylate metabolism
bgz00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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