KEGG   PATHWAY: bhai00020
Entry
bhai00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus haikouensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bhai00020  Citrate cycle (TCA cycle)
bhai00020

Module
bhai_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bhai00020]
bhai_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bhai00020]
bhai_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bhai00020]
bhai_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bhai00020]
bhai_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bhai00020]
Other DBs
GO: 0006099
Organism
Bacillus haikouensis [GN:bhai]
Gene
KJK41_16755  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
KJK41_11045  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
KJK41_16750  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KJK41_13250  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KJK41_13245  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KJK41_14910  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KJK41_02320  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KJK41_08415  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KJK41_09620  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
KJK41_09625  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
KJK41_09155  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KJK41_09150  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KJK41_16470  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KJK41_16465  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KJK41_16475  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
KJK41_03185  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
KJK41_06955  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KJK41_16745  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KJK41_21585  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KJK41_08525  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
KJK41_17320  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
KJK41_02305  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
KJK41_08400  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
KJK41_08405  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
KJK41_02315  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
KJK41_08410  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bhai00010  Glycolysis / Gluconeogenesis
bhai00053  Ascorbate and aldarate metabolism
bhai00061  Fatty acid biosynthesis
bhai00071  Fatty acid degradation
bhai00190  Oxidative phosphorylation
bhai00220  Arginine biosynthesis
bhai00250  Alanine, aspartate and glutamate metabolism
bhai00280  Valine, leucine and isoleucine degradation
bhai00350  Tyrosine metabolism
bhai00470  D-Amino acid metabolism
bhai00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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