KEGG   PATHWAY: bky00020
Entry
bky00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bartonella kosoy
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bky00020  Citrate cycle (TCA cycle)
bky00020

Module
bky_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bky00020]
bky_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bky00020]
bky_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bky00020]
bky_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bky00020]
Other DBs
GO: 0006099
Organism
Bartonella kosoy [GN:bky]
Gene
D1093_06120  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
D1093_01895  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
D1093_03960  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
D1093_01265  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
D1093_01260  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
D1093_01255  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
D1093_05815  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
D1093_01270  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
D1093_01275  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
D1093_00890  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
D1093_00885  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
D1093_00900  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
D1093_00895  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
D1093_00040  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
D1093_01280  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
D1093_05800  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
D1093_05805  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
D1093_05810  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bky00010  Glycolysis / Gluconeogenesis
bky00061  Fatty acid biosynthesis
bky00071  Fatty acid degradation
bky00190  Oxidative phosphorylation
bky00220  Arginine biosynthesis
bky00250  Alanine, aspartate and glutamate metabolism
bky00280  Valine, leucine and isoleucine degradation
bky00350  Tyrosine metabolism
bky00470  D-Amino acid metabolism
bky00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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