KEGG   PATHWAY: bld00020
Entry
bld00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus licheniformis DSM 13 = ATCC 14580
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bld00020  Citrate cycle (TCA cycle)
bld00020

Module
bld_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bld00020]
bld_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bld00020]
bld_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bld00020]
bld_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bld00020]
bld_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bld00020]
Other DBs
GO: 0006099
Organism
Bacillus licheniformis DSM 13 = ATCC 14580 [GN:bld]
Gene
BLi03062  citZ; citrate synthase CitZ [KO:K01647] [EC:2.3.3.1]
BLi01010  citA; citrate synthase CitA [KO:K01647] [EC:2.3.3.1]
BLi04094  mmgD; 2-methylcitrate synthase MmgD [KO:K01647] [EC:2.3.3.1]
BLi02047  citB; trigger enzyme aconitase/RNA-binding protein CitB [KO:K01681] [EC:4.2.1.3]
BLi03061  icd; isocitrate dehydrogenase Icd [KO:K00031] [EC:1.1.1.42]
BLi02260  odhA; 2-oxoglutarate dehydrogenase E1 component OdhA [KO:K00164] [EC:1.2.4.2]
BLi02259  odhB; 2-oxoglutarate dehydrogenase E2 component OdhB [KO:K00658] [EC:2.3.1.61]
BLi02583  lpdV; dihydrolipoamide dehydrogenase LpdV [KO:K00382] [EC:1.8.1.4]
BLi01677  pdhD; dihydrolipoyl dehydrogenase PdhD [KO:K00382] [EC:1.8.1.4]
BLi00852  acoL; acetoin dehydrogenase dihydrolipoamide dehydrogenase E3 component AcoL [KO:K00382] [EC:1.8.1.4]
BLi01830  sucD; succinyl-CoA ligase alpha subunit SucD [KO:K01902] [EC:6.2.1.5]
BLi01829  sucC; succinyl-CoA ligase beta subunit SucC [KO:K01903] [EC:6.2.1.5]
BLi02993  sdhA; succinate dehydrogenase flavoprotein subunit SdhA [KO:K00239] [EC:1.3.5.1]
BLi02992  sdhB; succinate dehydrogenase iron-sulfur subunit SdhB [KO:K00240] [EC:1.3.5.1]
BLi02994  sdhC; succinate dehydrogenase cytochrome b558 subunit SdhC [KO:K00241]
BLi03486  citG; fumarate hydratase CitG [KO:K01679] [EC:4.2.1.2]
BLi03060  mdh; malate dehydrogenase Mdh [KO:K00024] [EC:1.1.1.37]
BLi01703  pycA; pyruvate carboxylase PycA [KO:K01958] [EC:6.4.1.1]
BLi03197  pckA; phosphoenolpyruvate carboxykinase PckA [KO:K01610] [EC:4.1.1.49]
BLi01674  pdhA; pyruvate dehydrogenase E1 component alpha subunit PdhA [KO:K00161] [EC:1.2.4.1]
BLi01675  pdhB; pyruvate dehydrogenase E1 component beta subunit PdhB [KO:K00162] [EC:1.2.4.1]
BLi00851  acoC; acetoin dehydrogenase dihydrolipoamide-acetyltransferase E2 component AcoC [KO:K00627] [EC:2.3.1.12]
BLi01676  pdhC; dihydrolipoyllysine-residue acetyltransferase component PdhC [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bld00010  Glycolysis / Gluconeogenesis
bld00053  Ascorbate and aldarate metabolism
bld00061  Fatty acid biosynthesis
bld00071  Fatty acid degradation
bld00190  Oxidative phosphorylation
bld00220  Arginine biosynthesis
bld00250  Alanine, aspartate and glutamate metabolism
bld00280  Valine, leucine and isoleucine degradation
bld00350  Tyrosine metabolism
bld00470  D-Amino acid metabolism
bld00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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