KEGG   PATHWAY: bli00020
Entry
bli00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus licheniformis ATCC 14580
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bli00020  Citrate cycle (TCA cycle)
bli00020

Module
bli_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bli00020]
bli_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bli00020]
bli_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bli00020]
bli_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bli00020]
bli_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bli00020]
Other DBs
GO: 0006099
Organism
Bacillus licheniformis ATCC 14580 [GN:bli]
Gene
BL02891  citA; citrate synthase I [KO:K01647] [EC:2.3.3.1]
BL00399  citZ; citrate synthase II [KO:K01647] [EC:2.3.3.1]
BL00561  mmgD; citrate synthase III [KO:K01647] [EC:2.3.3.1]
BL02940  citB; aconitate hydratase (aconitase) [KO:K01681] [EC:4.2.1.3]
BL00398  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BL01452  odhA; 2-oxoglutarate dehydrogenase (E1 subunit) [KO:K00164] [EC:1.2.4.2]
BL01453  odhB; 2-oxoglutarate dehydrogenase complex (dihydrolipoamide transsuccinylase, E2 subunit) [KO:K00658] [EC:2.3.1.61]
BL03015  acoL; acetoin dehydrogenase E3 component (dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
BL01619  pdhD; dihydrolipoamide dehydrogenase E3 subunit of both pyruvate dehydrogenase and 2-oxoglutarate dehydrogenase complexes [KO:K00382] [EC:1.8.1.4]
BL01503  bfmBC; branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
BL01284  sucD; succinyl-CoA synthetase (alpha subunit) [KO:K01902] [EC:6.2.1.5]
BL01285  sucC; succinyl-CoA synthetase (beta subunit) [KO:K01903] [EC:6.2.1.5]
BL00322  sdhA; succinate dehydrogenase (flavoprotein subunit) [KO:K00239] [EC:1.3.5.1]
BL00320  sdhB; succinate dehydrogenase (iron-sulfur protein) [KO:K00240] [EC:1.3.5.1]
BL00323  sdhC; succinate dehydrogenase (cytochrome b558 subunit) [KO:K00241]
BL00732  citG; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BL00397  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BL02976  pycA; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BL00839  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
BL01616  pdhA; pyruvate dehydrogenase (E1 alpha subunit) [KO:K00161] [EC:1.2.4.1]
BL01617  pdhB; pyruvate dehydrogenase (E1 beta subunit) [KO:K00162] [EC:1.2.4.1]
BL03014  acoC; acetoin dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [KO:K00627] [EC:2.3.1.12]
BL01618  pdhC; pyruvate dehydrogenase (dihydrolipoamide acetyltransferase E2 subunit) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bli00010  Glycolysis / Gluconeogenesis
bli00053  Ascorbate and aldarate metabolism
bli00061  Fatty acid biosynthesis
bli00071  Fatty acid degradation
bli00190  Oxidative phosphorylation
bli00220  Arginine biosynthesis
bli00250  Alanine, aspartate and glutamate metabolism
bli00280  Valine, leucine and isoleucine degradation
bli00350  Tyrosine metabolism
bli00470  D-Amino acid metabolism
bli00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system