KEGG   PATHWAY: bmeg00020
Entry
bmeg00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus megaterium NBRC 15308 = ATCC 14581
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bmeg00020  Citrate cycle (TCA cycle)
bmeg00020

Module
bmeg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bmeg00020]
bmeg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bmeg00020]
bmeg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bmeg00020]
bmeg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bmeg00020]
bmeg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bmeg00020]
Other DBs
GO: 0006099
Organism
Bacillus megaterium NBRC 15308 = ATCC 14581 [GN:bmeg]
Gene
BG04_5579  citA; citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
BG04_1761  citZ; citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
BG04_5008  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BG04_1760  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
BG04_5433  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
BG04_5432  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BG04_4215  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BG04_3643  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BG04_1358  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BG04_1031  acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BG04_1030  acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BG04_1121  sucD; succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
BG04_1122  sucC; succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
BG04_5186  succinate CoA transferase family protein [KO:K18118] [EC:2.8.3.18]
BG04_1715  sdhA; succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BG04_1714  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
BG04_1716  sdhC; succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
BG04_2678  hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein [KO:K01676] [EC:4.2.1.2]
BG04_4690  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BG04_1759  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
BG04_5223  mqo; malate dehydrogenase [KO:K00116] [EC:1.1.5.4]
BG04_5382  mqo; malate dehydrogenase [KO:K00116] [EC:1.1.5.4]
BG04_3663  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BG04_1853  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
BG04_3640  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
BG04_3641  pdhB; pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
BG04_4214  e3 binding domain protein [KO:K00627] [EC:2.3.1.12]
BG04_3642  pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bmeg00010  Glycolysis / Gluconeogenesis
bmeg00053  Ascorbate and aldarate metabolism
bmeg00061  Fatty acid biosynthesis
bmeg00071  Fatty acid degradation
bmeg00190  Oxidative phosphorylation
bmeg00220  Arginine biosynthesis
bmeg00250  Alanine, aspartate and glutamate metabolism
bmeg00280  Valine, leucine and isoleucine degradation
bmeg00350  Tyrosine metabolism
bmeg00470  D-Amino acid metabolism
bmeg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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