KEGG   PATHWAY: bol00020
Entry
bol00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Brucella canis Oliveri
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bol00020  Citrate cycle (TCA cycle)
bol00020

Module
bol_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bol00020]
bol_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bol00020]
bol_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bol00020]
bol_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bol00020]
bol_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bol00020]
Other DBs
GO: 0006099
Organism
Brucella canis Oliveri [GN:bol]
Gene
BCOUA_I1148  gltA; gltA [KO:K01647] [EC:2.3.3.1]
BCOUA_I0093  acnA; acnA [KO:K01681] [EC:4.2.1.3]
BCOUA_I1199  unnamed protein product [KO:K00031] [EC:1.1.1.42]
BCOUA_I1923  sucA; sucA [KO:K00164] [EC:1.2.4.2]
BCOUA_I1922  sucB; sucB [KO:K00658] [EC:2.3.1.61]
BCOUA_I1126  lpdA-1; lpdA-1 [KO:K00382] [EC:1.8.1.4]
BCOUA_II0527  lpdA-3; lpdA-3 [KO:K00382] [EC:1.8.1.4]
BCOUA_I1918  lpdA-2; lpdA-2 [KO:K00382] [EC:1.8.1.4]
BCOUA_I1925  sucD; sucD [KO:K01902] [EC:6.2.1.5]
BCOUA_I1926  sucC; sucC [KO:K01903] [EC:6.2.1.5]
BCOUA_I1058  unnamed protein product [KO:K18118] [EC:2.8.3.18]
BCOUA_I1902  sdhA; sdhA [KO:K00239] [EC:1.3.5.1]
BCOUA_I1901  sdhB; sdhB [KO:K00240] [EC:1.3.5.1]
BCOUA_I1904  sdhC; sdhC [KO:K00241]
BCOUA_I1903  unnamed protein product [KO:K00242]
BCOUA_I0961  fumB; fumB [KO:K01676] [EC:4.2.1.2]
BCOUA_II0192  fumC; fumC [KO:K01679] [EC:4.2.1.2]
BCOUA_I1927  mdh; mdh [KO:K00024] [EC:1.1.1.37]
BCOUA_I1781  pyc; pyc [KO:K01958] [EC:6.4.1.1]
BCOUA_I2089  pckA; pckA [KO:K01610] [EC:4.1.1.49]
BCOUA_I1129  pdhA; pdhA [KO:K00161] [EC:1.2.4.1]
BCOUA_I1128  pdhB; pdhB [KO:K00162] [EC:1.2.4.1]
BCOUA_I1127  aceF; aceF [KO:K00627] [EC:2.3.1.12]
BCOUA_II0033  unnamed protein product [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bol00010  Glycolysis / Gluconeogenesis
bol00053  Ascorbate and aldarate metabolism
bol00061  Fatty acid biosynthesis
bol00071  Fatty acid degradation
bol00190  Oxidative phosphorylation
bol00220  Arginine biosynthesis
bol00250  Alanine, aspartate and glutamate metabolism
bol00280  Valine, leucine and isoleucine degradation
bol00350  Tyrosine metabolism
bol00470  D-Amino acid metabolism
bol00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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