KEGG   PATHWAY: bom00020
Entry
bom00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bos mutus (wild yak)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bom00020  Citrate cycle (TCA cycle)
bom00020

Module
bom_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bom00020]
bom_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bom00020]
bom_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bom00020]
bom_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bom00020]
bom_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bom00020]
Other DBs
GO: 0006099
Organism
Bos mutus (wild yak) [GN:bom]
Gene
102265930  PCK2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
102269910  IDH3B; LOW QUALITY PROTEIN: isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
102270407  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
102271756  PCK1; LOW QUALITY PROTEIN: phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
102273099  IDH3G; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X2 [KO:K00030] [EC:1.1.1.41]
102274774  OGDH; 2-oxoglutarate dehydrogenase complex component E1 isoform X1 [KO:K00164] [EC:1.2.4.2]
102274978  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial isoform X1 [KO:K00235] [EC:1.3.5.1]
102275002  ACO2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
102275241  OGDHL; 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
102275901  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
102277033  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial isoform X1 [KO:K00658] [EC:2.3.1.61]
102277085  SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
102277141  CS; citrate synthase, mitochondrial isoform X2 [KO:K01647] [EC:2.3.3.1]
102277665  DLD; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
102278228  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
102279139  ACO1; cytoplasmic aconitate hydratase isoform X1 [KO:K01681] [EC:4.2.1.3]
102279334  SUCLG2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
102280919  SUCLA2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
102281295  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X2 [KO:K00030] [EC:1.1.1.41]
102281830  SDHD; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1 [KO:K00237]
102282336  SUCLG1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
102282724  MDH2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
102283035  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
102284912  PC; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
102285206  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
102286090  PDHA2; pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
102286958  FH; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
102287054  ACLY; ATP-citrate synthase isoform X3 [KO:K01648] [EC:2.3.3.8]
102287425  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
102287624  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
138989592  [KO:K01647] [EC:2.3.3.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bom00010  Glycolysis / Gluconeogenesis
bom00053  Ascorbate and aldarate metabolism
bom00061  Fatty acid biosynthesis
bom00062  Fatty acid elongation
bom00071  Fatty acid degradation
bom00190  Oxidative phosphorylation
bom00220  Arginine biosynthesis
bom00250  Alanine, aspartate and glutamate metabolism
bom00280  Valine, leucine and isoleucine degradation
bom00350  Tyrosine metabolism
bom00470  D-Amino acid metabolism
bom00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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