KEGG   PATHWAY: bpso00030
Entry
bpso00030                   Pathway                                
Name
Pentose phosphate pathway - Burkholderia pseudomallei A79A
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bpso00030  Pentose phosphate pathway
bpso00030

Module
bpso_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:bpso00030]
bpso_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:bpso00030]
bpso_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:bpso00030]
bpso_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:bpso00030]
bpso_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:bpso00030]
Other DBs
GO: 0006098
Organism
Burkholderia pseudomallei A79A [GN:bpso]
Gene
X996_2117  phosphoglucose isomerase family protein [KO:K01810] [EC:5.3.1.9]
X996_1554  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
X996_1553  6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
X996_3092  lactonase, 7-bladed beta-propeller family protein [KO:K07404] [EC:3.1.1.31]
X996_5793  gnd; 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
X996_1080  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
X996_1202  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
X996_1944  hypothetical protein [KO:K00615] [EC:2.2.1.1]
X996_1945  hypothetical protein [KO:K00615] [EC:2.2.1.1]
X996_3105  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
X996_2593  rpiA; ribose 5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
X996_4870  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
X996_5571  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
X996_2549  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
X996_4090  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
X996_1494  phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein [KO:K15778] [EC:5.4.2.8 5.4.2.2]
X996_1298  phnN; phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN [KO:K05774] [EC:2.7.4.23]
X996_153  prs; ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
X996_1223  edd; phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
X996_1224  eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein [KO:K01625] [EC:4.1.2.14 4.1.3.42]
X996_4216  FAD binding domain protein [KO:K19813] [EC:1.1.5.9]
X996_5106  strictosidine synthase family protein [KO:K01053] [EC:3.1.1.17]
X996_2285  ghrB; glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
X996_1702  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
X996_1226  carbohydrate kinase, thermoresistant glucokinase family protein [KO:K00851] [EC:2.7.1.12]
X996_2246  pfkB carbohydrate kinase family protein [KO:K00874] [EC:2.7.1.45]
X996_2283  pfkB carbohydrate kinase family protein [KO:K00874] [EC:2.7.1.45]
X996_3405  fba; fructose-bisphosphate aldolase, class II, Calvin cycle subtype [KO:K01624] [EC:4.1.2.13]
X996_1609  fructose-1-6-bisphosphatase family protein [KO:K03841] [EC:3.1.3.11]
X996_5576  hexose kinase, 1-phosphofructokinase family protein [KO:K16370] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
bpso00010  Glycolysis / Gluconeogenesis
bpso00040  Pentose and glucuronate interconversions
bpso00052  Galactose metabolism
bpso00230  Purine metabolism
bpso00240  Pyrimidine metabolism
bpso00340  Histidine metabolism
bpso00630  Glyoxylate and dicarboxylate metabolism
bpso00750  Vitamin B6 metabolism
KO pathway
ko00030   
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