KEGG   PATHWAY: bsep00630
Entry
bsep00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Bradyrhizobium septentrionale
Class
Metabolism; Carbohydrate metabolism
Pathway map
bsep00630  Glyoxylate and dicarboxylate metabolism
bsep00630

Module
bsep_M00012  Glyoxylate cycle [PATH:bsep00630]
bsep_M00621  Glycine cleavage system [PATH:bsep00630]
bsep_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:bsep00630]
Other DBs
GO: 0046487 0043648
Organism
Bradyrhizobium septentrionale [GN:bsep]
Gene
HAP48_0027790  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
HAP48_0034815  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
HAP48_0048520  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
HAP48_0022675  acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
HAP48_0014935  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
HAP48_0020055  malate synthase G [KO:K01638] [EC:2.3.3.9]
HAP48_0048970  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HAP48_0014185  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HAP48_0040380  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HAP48_0017770  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
HAP48_0017775  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
HAP48_0014235  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HAP48_0025040  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
HAP48_0030585  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
HAP48_0034575  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
HAP48_0034670  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
HAP48_0043570  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
HAP48_0048500  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
HAP48_0007070  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
HAP48_0008190  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
HAP48_0008715  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
HAP48_0009585  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
HAP48_0017505  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
HAP48_0018785  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
HAP48_0019470  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
HAP48_0008185  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
HAP48_0017510  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
HAP48_0040600  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
HAP48_0043230  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
HAP48_0043635  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
HAP48_0031185  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
HAP48_0031195  methylmalonyl-CoA mutase subunit beta [KO:K01847] [EC:5.4.99.2]
HAP48_0021880  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
HAP48_0021910  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
HAP48_0021915  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
HAP48_0002135  catalase family peroxidase [KO:K03781] [EC:1.11.1.6]
HAP48_0015245  catalase [KO:K03781] [EC:1.11.1.6]
HAP48_0016205  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
HAP48_0033340  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
HAP48_0020835  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
HAP48_0033990  HAD hydrolase-like protein [KO:K01091] [EC:3.1.3.18]
HAP48_0048930  HAD hydrolase-like protein [KO:K01091] [EC:3.1.3.18]
HAP48_0003310  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
HAP48_0032235  form I ribulose bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
HAP48_0032240  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
HAP48_0047760  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
HAP48_0047770  alanine--glyoxylate aminotransferase family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
HAP48_0013775  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
HAP48_0036330  glutamine synthetase beta-grasp domain-containing protein [KO:K01915] [EC:6.3.1.2]
HAP48_0040920  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
HAP48_0011970  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
HAP48_0039165  hypothetical protein [KO:K00600] [EC:2.1.2.1]
HAP48_0041380  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
HAP48_0005505  hypothetical protein [KO:K00600] [EC:2.1.2.1]
HAP48_0010135  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
HAP48_0046450  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
HAP48_0046440  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
HAP48_0040045  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HAP48_0008200  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HAP48_0014150  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HAP48_0046445  gcvH; glycine cleavage system protein GcvH [KO:K02437]
HAP48_0007815  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
HAP48_0007810  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
HAP48_0007850  glycerate kinase [KO:K11529] [EC:2.7.1.165]
HAP48_0019080  glycerate kinase [KO:K11529] [EC:2.7.1.165]
HAP48_0030485  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
HAP48_0020950  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
HAP48_0034570  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
HAP48_0031800  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
HAP48_0031810  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
HAP48_0033725  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
HAP48_0003890  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
HAP48_0003895  NAD(P)H-dependent oxidoreductase subunit E [KO:K22515] [EC:1.17.1.9]
HAP48_0031815  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
HAP48_0033730  fdh3B; formate dehydrogenase FDH3 subunit beta [KO:K00124]
HAP48_0031820  formate dehydrogenase subunit gamma [KO:K00127]
HAP48_0033735  formate dehydrogenase subunit gamma [KO:K00127]
HAP48_0032175  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
HAP48_0030475  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
HAP48_0047445  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
HAP48_0029295  formamidase [KO:K01455] [EC:3.5.1.49]
HAP48_0032515  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
HAP48_0031955  oxc; oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bsep00010  Glycolysis / Gluconeogenesis
bsep00020  Citrate cycle (TCA cycle)
bsep00030  Pentose phosphate pathway
bsep00053  Ascorbate and aldarate metabolism
bsep00071  Fatty acid degradation
bsep00230  Purine metabolism
bsep00250  Alanine, aspartate and glutamate metabolism
bsep00260  Glycine, serine and threonine metabolism
bsep00620  Pyruvate metabolism
bsep00710  Carbon fixation in photosynthetic organisms
bsep00750  Vitamin B6 metabolism
bsep00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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