KEGG   PATHWAY: bsi00020
Entry
bsi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Brucella suis 1330
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bsi00020  Citrate cycle (TCA cycle)
bsi00020

Module
bsi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bsi00020]
bsi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bsi00020]
bsi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bsi00020]
bsi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bsi00020]
bsi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bsi00020]
Other DBs
GO: 0006099
Organism
Brucella suis 1330 [GN:bsi]
Gene
BS1330_I1144  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
BS1330_I0093  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BS1330_I1195  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BS1330_I1917  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BS1330_I1916  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BS1330_II0522  lpdA-3; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BS1330_I1122  lpdA-1; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BS1330_I1912  lpdA-2; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BS1330_I1919  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
BS1330_I1920  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
BS1330_I1054  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
BS1330_I1896  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BS1330_I1895  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BS1330_I1898  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BS1330_I1897  succinate dehydrogenase, hydrophobic membrane anchor protein, putative [KO:K00242]
BS1330_I0957  fumB; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
BS1330_II0189  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BS1330_I1921  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BS1330_I1775  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BS1330_I2083  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
BS1330_I1125  pdhA; pyruvate dehydrogenase complex, E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
BS1330_I1124  pdhB; pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
BS1330_II0033  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
BS1330_I1123  aceF; branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bsi00010  Glycolysis / Gluconeogenesis
bsi00053  Ascorbate and aldarate metabolism
bsi00061  Fatty acid biosynthesis
bsi00071  Fatty acid degradation
bsi00190  Oxidative phosphorylation
bsi00220  Arginine biosynthesis
bsi00250  Alanine, aspartate and glutamate metabolism
bsi00280  Valine, leucine and isoleucine degradation
bsi00350  Tyrosine metabolism
bsi00470  D-Amino acid metabolism
bsi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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