KEGG   PATHWAY: bsui00020
Entry
bsui00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Brucella suis bv. 2 Bs143CITA
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bsui00020  Citrate cycle (TCA cycle)
bsui00020

Module
bsui_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bsui00020]
bsui_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bsui00020]
bsui_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bsui00020]
bsui_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bsui00020]
bsui_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bsui00020]
Other DBs
GO: 0006099
Organism
Brucella suis bv. 2 Bs143CITA [GN:bsui]
Gene
BSSP1_I0551  gltA; Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
BSSP1_I0087  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BSSP1_I0502  Isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
BSSP1_I1725  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BSSP1_I1724  sucB; Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BSSP1_I1720  lpdA; Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
BSSP1_II0481  Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase [KO:K00382] [EC:1.8.1.4]
BSSP1_I0572  lpdA-1; Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
BSSP1_I1727  Succinyl-CoA ligase (ADP-forming) alpha chain [KO:K01902] [EC:6.2.1.5]
BSSP1_I1728  Succinyl-CoA ligase (ADP-forming) beta chain [KO:K01903] [EC:6.2.1.5]
BSSP1_I0643  Acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
BSSP1_I1703  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BSSP1_I1702  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BSSP1_I1705  Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
BSSP1_I1704  sdhD; Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
BSSP1_I0742  Fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
BSSP1_II0154  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
BSSP1_I1729  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BSSP1_II1221  Pyruvate carboxyl transferase [KO:K01958] [EC:6.4.1.1]
BSSP1_I1888  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BSSP1_I0569  Pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
BSSP1_I0570  Pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
BSSP1_II0002  Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
BSSP1_I0571  aceF; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bsui00010  Glycolysis / Gluconeogenesis
bsui00053  Ascorbate and aldarate metabolism
bsui00061  Fatty acid biosynthesis
bsui00071  Fatty acid degradation
bsui00190  Oxidative phosphorylation
bsui00220  Arginine biosynthesis
bsui00250  Alanine, aspartate and glutamate metabolism
bsui00280  Valine, leucine and isoleucine degradation
bsui00350  Tyrosine metabolism
bsui00470  D-Amino acid metabolism
bsui00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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