KEGG   PATHWAY: bsym00630
Entry
bsym00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Bradyrhizobium symbiodeficiens
Class
Metabolism; Carbohydrate metabolism
Pathway map
bsym00630  Glyoxylate and dicarboxylate metabolism
bsym00630

Module
bsym_M00012  Glyoxylate cycle [PATH:bsym00630]
bsym_M00621  Glycine cleavage system [PATH:bsym00630]
bsym_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:bsym00630]
Other DBs
GO: 0046487 0043648
Organism
Bradyrhizobium symbiodeficiens [GN:bsym]
Gene
CIT39_05535  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
CIT39_03000  acyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
CIT39_11750  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
CIT39_31595  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
CIT39_26700  malate synthase G [KO:K01638] [EC:2.3.3.9]
CIT39_32195  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CIT39_15920  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
CIT39_33290  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
CIT39_33295  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
CIT39_32145  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CIT39_22030  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
CIT39_33035  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
CIT39_18045  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
CIT39_02855  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CIT39_11600  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
CIT39_11705  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CIT39_08265  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
CIT39_05395  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
CIT39_27055  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
CIT39_01375  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
CIT39_00650  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
CIT39_33040  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
CIT39_16195  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
CIT39_02900  CoA ester lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
CIT39_17660  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
CIT39_18130  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
CIT39_08890  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
CIT39_02110  FAD-linked oxidase C-terminal domain-containing protein [KO:K00104] [EC:1.1.99.14]
CIT39_02115  FAD-binding protein [KO:K11472] [EC:1.1.99.14]
CIT39_02120  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
CIT39_23525  catalase [KO:K03781] [EC:1.11.1.6]
CIT39_30630  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
CIT39_24385  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
CIT39_26140  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
CIT39_17365  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
CIT39_10810  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
CIT39_15300  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
CIT39_06675  form I ribulose bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
CIT39_06680  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
CIT39_21395  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
CIT39_32545  aminotransferase class V-fold PLP-dependent enzyme [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
CIT39_16415  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
CIT39_29200  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
CIT39_12725  glutamine synthetase beta-grasp domain-containing protein [KO:K01915] [EC:6.3.1.2]
CIT39_16735  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
CIT39_20095  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
CIT39_20085  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
CIT39_15705  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CIT39_32230  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CIT39_20090  gcvH; glycine cleavage system protein GcvH [KO:K02437]
CIT39_09455  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
CIT39_09460  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
CIT39_09465  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
CIT39_27115  glycerate kinase [KO:K11529] [EC:2.7.1.165]
CIT39_08160  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
CIT39_23675  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
CIT39_11595  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
CIT39_10610  oxalate decarboxylase family bicupin [KO:K01569] [EC:4.1.1.2]
CIT39_09240  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
CIT39_04480  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
CIT39_09250  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
CIT39_04475  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region domain-containing protein [KO:K22515] [EC:1.17.1.9]
CIT39_09255  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
CIT39_06585  fdh3B; formate dehydrogenase FDH3 subunit beta [KO:K00124]
CIT39_09260  formate dehydrogenase subunit gamma [KO:K00127]
CIT39_06580  formate dehydrogenase subunit gamma [KO:K00127]
CIT39_12665  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
CIT39_21030  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
CIT39_29715  fmdA; formamidase [KO:K01455] [EC:3.5.1.49]
CIT39_09410  oxc; oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bsym00010  Glycolysis / Gluconeogenesis
bsym00020  Citrate cycle (TCA cycle)
bsym00030  Pentose phosphate pathway
bsym00053  Ascorbate and aldarate metabolism
bsym00071  Fatty acid degradation
bsym00230  Purine metabolism
bsym00250  Alanine, aspartate and glutamate metabolism
bsym00260  Glycine, serine and threonine metabolism
bsym00620  Pyruvate metabolism
bsym00710  Carbon fixation by Calvin cycle
bsym00750  Vitamin B6 metabolism
bsym00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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