KEGG   PATHWAY: btax00020
Entry
btax00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Budorcas taxicolor (takin)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
btax00020  Citrate cycle (TCA cycle)
btax00020

Module
btax_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:btax00020]
btax_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:btax00020]
btax_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:btax00020]
btax_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:btax00020]
btax_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:btax00020]
Other DBs
GO: 0006099
Organism
Budorcas taxicolor (takin) [GN:btax]
Gene
128044593  SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial isoform X1 [KO:K00236]
128044994  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
128045165  [KO:K01899] [EC:6.2.1.4 6.2.1.5]
128046218  SUCLG2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
128046237  DLD; dihydrolipoyl dehydrogenase, mitochondrial isoform X1 [KO:K00382] [EC:1.8.1.4]
128046814  OGDH; 2-oxoglutarate dehydrogenase complex component E1 isoform X1 [KO:K00164] [EC:1.2.4.2]
128047872  OGDHL; 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
128048437  ACO2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
128048886  CS; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
128049967  PDHA2; pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial [KO:K00161] [EC:1.2.4.1]
128050328  [KO:K00236]
128050633  [KO:K00161] [EC:1.2.4.1]
128051017  [KO:K00162] [EC:1.2.4.1]
128052010  ACO1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
128054099  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
128054171  PCK2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
128055828  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
128055900  [KO:K00237]
128055981  SUCLG1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
128057541  SUCLA2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
128058021  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
128058326  IDH3B; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
128060071  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
128060079  SDHD; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
128061481  FH; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
128062194  [KO:K00237]
128063874  MDH2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
128065630  ACLY; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
128066232  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
128066389  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
128066425  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
128068487  PC; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
128068843  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
128069029  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial isoform X1 [KO:K00235] [EC:1.3.5.1]
128069711  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
128069752  IDH3G; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
btax00010  Glycolysis / Gluconeogenesis
btax00053  Ascorbate and aldarate metabolism
btax00061  Fatty acid biosynthesis
btax00062  Fatty acid elongation
btax00071  Fatty acid degradation
btax00190  Oxidative phosphorylation
btax00220  Arginine biosynthesis
btax00250  Alanine, aspartate and glutamate metabolism
btax00280  Valine, leucine and isoleucine degradation
btax00350  Tyrosine metabolism
btax00470  D-Amino acid metabolism
btax00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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