KEGG   PATHWAY: bteq00020
Entry
bteq00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus tequilensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bteq00020  Citrate cycle (TCA cycle)
bteq00020

Module
bteq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bteq00020]
bteq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bteq00020]
bteq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bteq00020]
bteq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bteq00020]
bteq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bteq00020]
Other DBs
GO: 0006099
Organism
Bacillus tequilensis [GN:bteq]
Gene
G4P54_05025  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
G4P54_12635  mmgD; citrate synthase [KO:K01647] [EC:2.3.3.1]
G4P54_14845  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
G4P54_10255  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
G4P54_14840  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
G4P54_11130  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
G4P54_11125  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
G4P54_04240  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
G4P54_07645  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
G4P54_12595  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
G4P54_08405  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
G4P54_08400  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
G4P54_14495  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
G4P54_14490  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
G4P54_14500  sdhC; succinate dehydrogenase cytochrome B558 [KO:K00241]
G4P54_16935  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
G4P54_14835  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
G4P54_07785  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
G4P54_15495  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
G4P54_07630  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
G4P54_07635  pdhB; pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
G4P54_04235  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
G4P54_07640  pdhC; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bteq00010  Glycolysis / Gluconeogenesis
bteq00053  Ascorbate and aldarate metabolism
bteq00061  Fatty acid biosynthesis
bteq00071  Fatty acid degradation
bteq00190  Oxidative phosphorylation
bteq00220  Arginine biosynthesis
bteq00250  Alanine, aspartate and glutamate metabolism
bteq00280  Valine, leucine and isoleucine degradation
bteq00350  Tyrosine metabolism
bteq00470  D-Amino acid metabolism
bteq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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