KEGG   PATHWAY: btk00020
Entry
btk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus thuringiensis serovar konkukian 97-27
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
btk00020  Citrate cycle (TCA cycle)
btk00020

Module
btk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:btk00020]
btk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:btk00020]
btk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:btk00020]
btk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:btk00020]
btk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:btk00020]
Other DBs
GO: 0006099
Organism
Bacillus thuringiensis serovar konkukian 97-27 [GN:btk]
Gene
BT9727_4323  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
BT9727_2125  mmgD; citrate synthase [KO:K01647] [EC:2.3.3.1]
BT9727_3370  citB; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BT9727_4322  citC; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BT9727_1158  odhA; 2-oxoglutarate dehydrogenase, E1 component (alpha-ketoglutarate dehydrogenase) [KO:K00164] [EC:1.2.4.2]
BT9727_1157  odhB; 2-oxoglutarate dehydrogenase complex, E2 component (dihydrolipoamide succinyltransferase) [KO:K00658] [EC:2.3.1.61]
BT9727_2536  acoL; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BT9727_3712  pdhD; pyruvate dehydrogenase complex E3 component, dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BT9727_3906  bfmbC; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BT9727_3515  porA; pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BT9727_3514  porB; pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BT9727_3576  sucD; succinyl-CoA synthase, alpha subunit [KO:K01902] [EC:6.2.1.5]
BT9727_3577  sucC; succinyl-CoA synthase, beta subunit [KO:K01903] [EC:6.2.1.5]
BT9727_1704  succinyl-CoA: coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
BT9727_4252  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BT9727_4251  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BT9727_4253  sdhC; succinate dehydrogenase cytochrome B-558 subunit [KO:K00241]
BT9727_0401  fumA; fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BT9727_1617  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BT9727_4321  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BT9727_2712  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BT9727_3690  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BT9727_4501  pckA; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
BT9727_3715  pdhA; pyruvate dehydrogenase complex E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
BT9727_3714  pdhB; pyruvate dehydrogenase complex E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
BT9727_2537  acoC; dihydrolipoamide S-acetyltransferase [KO:K00627] [EC:2.3.1.12]
BT9727_3713  pdhC; pyruvate dehydrogenase complex E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
btk00010  Glycolysis / Gluconeogenesis
btk00053  Ascorbate and aldarate metabolism
btk00061  Fatty acid biosynthesis
btk00071  Fatty acid degradation
btk00190  Oxidative phosphorylation
btk00220  Arginine biosynthesis
btk00250  Alanine, aspartate and glutamate metabolism
btk00280  Valine, leucine and isoleucine degradation
btk00350  Tyrosine metabolism
btk00470  D-Amino acid metabolism
btk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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